PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn087151
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 243aa    MW: 26755.3 Da    PI: 6.1684
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn087151genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.11.8e-0999129131
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC. CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPkas 31 
                 +r++h ++Er+RR+++N+ ++  r+l+P ++
  Achn087151  99 QRMTHIAVERNRRKQMNDYLAIVRSLMPASY 129
                 79**************************963 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.26E-889139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.54E-697132No hitNo description
Gene3DG3DSA:4.10.280.101.1E-797133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.77598149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-699129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MALDAMEYPP DLFGYAYKEL HTLSALWGGY EQDKTLIGIL DNSSSASSHA MQNGKEYWDP  60
DSSPEAGEGS TPAEAQGGGG RRKRRRTKSS KNKEELESQR MTHIAVERNR RKQMNDYLAI  120
VRSLMPASYV QRYSTTSPVA AAGEASAEHQ PAMAEIEVTM AESHATLKIL SKRRPRQLLK  180
LVAGIQCLML TVLHLNVTTV DQMVLYSLSV KIEDGSQLST VDEIADAVNH LLARIEEEAV  240
MC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18185RKRRR
28186RKRRRT
399110RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028052116.15e-94transcription factor bHLH96-like
SwissprotQ9C7T42e-56BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A2R6RNJ61e-159A0A2R6RNJ6_ACTCH; Transcription factor bHLH96 like
STRINGGLYMA14G35560.19e-71(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19962462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.15e-59bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]