PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn088031
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family TALE
Protein Properties Length: 360aa    MW: 41536.2 Da    PI: 6.3274
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn088031genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.82.1e-092863212055
                 HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
    Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                 +k +yps++e+  LA+++gL+++q+ +WF N+R ++
  Achn088031 286 YKWPYPSETEKVALAESTGLDQKQINNWFINQRKRH 321
                 5679*****************************885 PP
2ELK37.93.7e-13241262122
         ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                 ELK++LlrKYsgyL+sLkqE+s
  Achn088031 241 ELKNHLLRKYSGYLSSLKQELS 262
                 9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012557.3E-2397141IPR005540KNOX1
PfamPF037902.5E-2398140IPR005540KNOX1
SMARTSM012562.1E-28148199IPR005541KNOX2
PfamPF037918.7E-25153197IPR005541KNOX2
SMARTSM011883.5E-7241262IPR005539ELK domain
PROSITE profilePS5121311.296241261IPR005539ELK domain
PfamPF037892.5E-10241262IPR005539ELK domain
PROSITE profilePS5007112.908261324IPR001356Homeobox domain
SuperFamilySSF466891.33E-19262336IPR009057Homeodomain-like
SMARTSM003897.7E-13263328IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.2E-27266327IPR009057Homeodomain-like
CDDcd000865.76E-12273325No hitNo description
PfamPF059201.3E-16281320IPR008422Homeobox KN domain
PROSITE patternPS000270299322IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MEDYSQMSEN TSHRGSFLYG TGQILGPNIN INTNSNNNSF HLHPSGDYQS DHHSIVKTEA  60
GTSQKFHYPC IRTHQTDHNQ QQQQQQHDHH QSPSDVEAIK AKIISHPHYS NLLEAYMDCQ  120
KVGAPPEVAA RLAAVREEFE ARQRASVACR DESKDPELDQ FMEAYCDMLV KYREELTRPL  180
QEAMEFMRRI ETQLNMLSNG PVRIFTSDEK CEGVGSSEED QDNSGGETEL PEIDPRAEDR  240
ELKNHLLRKY SGYLSSLKQE LSKKKKKGKL PKDARQKLLN WWELHYKWPY PSETEKVALA  300
ESTGLDQKQI NNWFINQRKR HWKPSEDMQF MVMDGLHPQN AALYMEGHYM GEGPYRLGP*
Functional Description ? help Back to Top
Source Description
UniProtAppears to be involved in meristem formation and in the regulation of leaf morphology. Misexpression makes the leaf more compound which is always associated with growth retardation and loss of apical dominance, resulting in dwarfed, bushy plants. Probably binds to the DNA sequence 5'-TGAC-3'.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00675ChIP-seqTransfer from GRMZM2G017087Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002285521.10.0PREDICTED: homeobox protein knotted-1-like 2
SwissprotQ413301e-173KN1_SOLLC; Homeotic protein knotted-1
TrEMBLA0A2R6RNA30.0A0A2R6RNA3_ACTCH; Homeotic protein like
STRINGVIT_18s0001g08380.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49732333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-132KNOTTED-like from Arabidopsis thaliana