PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn088571

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

FAR1

Protein Properties

Length: 131aa MW: 15096.8 Da PI: 6.618

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn088571	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	33.8	1.1e-10	42	129	1	71
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk................tekerrtraetrtgCkaklkvkke 71 k+Y++Y+++ F +r+++s+k ++++ +t+ fvC keg ++ kk +k++r+ ++ ++gC+a+l++k++ Achn088571 42 KYYEDYGRQNSFWIRTRTSSKGqNQSNDVTSVLFVCAKEGMYVRKAKKegvkgndereendevlPKKRKRSCSTAKCGCNAQLRIKRD 129 69***********9988876466778********9988888889*******9998899999999*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.1E-8	42	129	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 131 aa Download sequence Send to blast
MEESFGLYDF EVEDLQTPNN DVERLEAPSS GMFFETIEEA RKYYEDYGRQ NSFWIRTRTS 60 SKGQNQSNDV TSVLFVCAKE GMYVRKAKKE GVKGNDEREE NDEVLPKKRK RSCSTAKCGC 120 NAQLRIKRDK *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	106	111	KKRKRS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004289266.1	1e-35	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2R6R5G6	1e-51	A0A2R6R5G6_ACTCH; Protein FAR1-RELATED SEQUENCE like
STRING	XP_004289266.1	5e-35	(Fragaria vesca)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	7e-09	FAR1-related sequence 10