PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn088681

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

GRAS

Protein Properties

Length: 702aa MW: 78568.2 Da PI: 6.3341

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn088681	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	326.8	4.3e-100	210	510	1	303
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 l++lL++cA+++s+++ ++l+ + + s +g+p+qRl ay++eAL ar s+s++y++ +++e + ++ l+++++++e++P+lkf++++aN Achn088681 210 LKQLLIACAKVLSENKIDDFDNLIDKARSAISVSGEPIQRLGAYLVEALVARKEASGSNIYRSQRCKEPE---GKDLLSYMQILYEICPYLKFGYMAAN 305 689***************************************************************99...9********************* PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 aI +a +e+++HiiDf+i qG+QW++LlqaLa+Rp+g+p++RiTg+++p ++ + ++l ++++rL+ + ++ ++p+ef++ v d+++++L+v Achn088681 306 GAIADACRNEDHIHIIDFQIAQGIQWMTLLQALAARPSGAPHVRITGIDDPVNQyaRGDSLAAVENRLKVISDKYNIPVEFHA-VPVFAPDVTMDMLDV 403 ***********************************************999999**********************.688899***** PP GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295 ++gEal+Vn+ lqlh+++desv+++++rd +L++vksl+Pkvv++veqe+++n+++F++rf+e+l++ysa+f+s++++l r+s+eri+vE+++l+r+iv Achn088681 404 RSGEALIVNFPLQLHHTPDESVDVNNPRDGLLRMVKSLNPKVVTLVEQESNTNTAPFVARFVETLNFYSAMFESIDVTLLRDSKERINVEQHCLARDIV 502 *********************************************************************************************** PP GRAS 296 nvvacega 303 n++ac++ Achn088681 503 NIIACSQL 510 ***875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	50.286	184	562	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.5E-97	210	510	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 702 aa Download sequence Send to blast
MDSRQFFGYG VTGADLSYSS HHNVPSVPAR MSEFLKFGSR NSPNSPFSTH FDSENLATLS 60 DSQEQRSSTE NLSRASPSYN SSLGSNNYCQ QSSPSLCCRQ NSVLLHFGET SFLQDDNIKY 120 ALQELETTLM APDEEEEVAT PSPSLGENKR PQTSGQRSMA WSQEPQGSHV TQSQPSHSSR 180 YGKLNEGFRS EKRHKSMEDA SLQGIPPGNL KQLLIACAKV LSENKIDDFD NLIDKARSAI 240 SVSGEPIQRL GAYLVEALVA RKEASGSNIY RSQRCKEPEG KDLLSYMQIL YEICPYLKFG 300 YMAANGAIAD ACRNEDHIHI IDFQIAQGIQ WMTLLQALAA RPSGAPHVRI TGIDDPVNQY 360 ARGDSLAAVE NRLKVISDKY NIPVEFHAVP VFAPDVTMDM LDVRSGEALI VNFPLQLHHT 420 PDESVDVNNP RDGLLRMVKS LNPKVVTLVE QESNTNTAPF VARFVETLNF YSAMFESIDV 480 TLLRDSKERI NVEQHCLARD IVNIIACSQL TPDRTEIGAR EPNPPTLTSH GLLLTVRPPA 540 NHHRSTTGLP PFESLYKTTT DPRPPPHRST IILLPPSDHR NTTIRPSQYH RRFARPSQIY 600 HPEAEANKNI AMVREALYKL YYEYVSVHTS VNSEQLKTRE TCSSSTLPNE KFIVTGRSKF 660 ESFTKKADTM QLMKFDLDIY LEESVYICDE GISSHFDALK W*

Sequence ? help Back to Top

Protein Sequence Length: 702 aa Download sequence Send to blast

MDSRQFFGYG VTGADLSYSS HHNVPSVPAR MSEFLKFGSR NSPNSPFSTH FDSENLATLS  60
DSQEQRSSTE NLSRASPSYN SSLGSNNYCQ QSSPSLCCRQ NSVLLHFGET SFLQDDNIKY  120
ALQELETTLM APDEEEEVAT PSPSLGENKR PQTSGQRSMA WSQEPQGSHV TQSQPSHSSR  180
YGKLNEGFRS EKRHKSMEDA SLQGIPPGNL KQLLIACAKV LSENKIDDFD NLIDKARSAI  240
SVSGEPIQRL GAYLVEALVA RKEASGSNIY RSQRCKEPEG KDLLSYMQIL YEICPYLKFG  300
YMAANGAIAD ACRNEDHIHI IDFQIAQGIQ WMTLLQALAA RPSGAPHVRI TGIDDPVNQY  360
ARGDSLAAVE NRLKVISDKY NIPVEFHAVP VFAPDVTMDM LDVRSGEALI VNFPLQLHHT  420
PDESVDVNNP RDGLLRMVKS LNPKVVTLVE QESNTNTAPF VARFVETLNF YSAMFESIDV  480
TLLRDSKERI NVEQHCLARD IVNIIACSQL TPDRTEIGAR EPNPPTLTSH GLLLTVRPPA  540
NHHRSTTGLP PFESLYKTTT DPRPPPHRST IILLPPSDHR NTTIRPSQYH RRFARPSQIY  600
HPEAEANKNI AMVREALYKL YYEYVSVHTS VNSEQLKTRE TCSSSTLPNE KFIVTGRSKF  660
ESFTKKADTM QLMKFDLDIY LEESVYICDE GISSHFDALK W*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-47	237	569	30	360	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269\|PubMed:12591613}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269\|PubMed:12591613}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028126203.1	0.0	scarecrow-like protein 21
Swissprot	Q69VG1	1e-171	CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBL	A0A2R6QDF0	0.0	A0A2R6QDF0_ACTCH; Chitin-inducible gibberellin-responsive protein
STRING	XP_008244327.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3441	24	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48150.2	1e-130	GRAS family protein

Publications ? help Back to Top
Day RB, et al. Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells. Plant Mol. Biol., 2004. 54(2): p. 261-72 [PMID:15159627]