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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Achn089771 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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| Family | M-type_MADS | ||||||||
| Protein Properties | Length: 198aa MW: 22668.8 Da PI: 7.8787 | ||||||||
| Description | M-type_MADS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | SRF-TF | 98.7 | 2.3e-31 | 28 | 77 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyeys
Achn089771 28 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYS 77
79***********************************************8 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SMART | SM00432 | 1.1E-40 | 20 | 79 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS50066 | 33.529 | 20 | 80 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 3.01E-30 | 20 | 94 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 1.20E-41 | 21 | 128 | No hit | No description |
| PRINTS | PR00404 | 3.7E-32 | 22 | 42 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 22 | 76 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 1.4E-26 | 29 | 76 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 3.7E-32 | 42 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 3.7E-32 | 57 | 78 | IPR002100 | Transcription factor, MADS-box |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 198 aa Download sequence Send to blast |
MAFPNDHESM DFSLSPQRKM GRGKIEIKRI ENTTNRQVTF CKRRNGLLKK AYELSVLCDA 60 EVALIVFSTR GRLYEYSINS FLYILMNFFE YLYIYPCTKF CTCLNEKFSF SVKATIERYK 120 KATSDSSNPG SISELNAQIA EHERAEQQMN LMPGGGSGYE LVGQPHLSLD AQNYLQLNEL 180 QPNHHYSRPD QTPLQLV* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1tqe_P | 2e-21 | 20 | 91 | 1 | 72 | Myocyte-specific enhancer factor 2B |
| 1tqe_Q | 2e-21 | 20 | 91 | 1 | 72 | Myocyte-specific enhancer factor 2B |
| 1tqe_R | 2e-21 | 20 | 91 | 1 | 72 | Myocyte-specific enhancer factor 2B |
| 1tqe_S | 2e-21 | 20 | 91 | 1 | 72 | Myocyte-specific enhancer factor 2B |
| 6c9l_A | 2e-21 | 20 | 91 | 1 | 72 | Myocyte-specific enhancer factor 2B |
| 6c9l_B | 2e-21 | 20 | 91 | 1 | 72 | Myocyte-specific enhancer factor 2B |
| 6c9l_C | 2e-21 | 20 | 91 | 1 | 72 | Myocyte-specific enhancer factor 2B |
| 6c9l_D | 2e-21 | 20 | 91 | 1 | 72 | Myocyte-specific enhancer factor 2B |
| 6c9l_E | 2e-21 | 20 | 91 | 1 | 72 | Myocyte-specific enhancer factor 2B |
| 6c9l_F | 2e-21 | 20 | 91 | 1 | 72 | Myocyte-specific enhancer factor 2B |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | AB627125 | 1e-56 | AB627125.1 Panax ginseng PgMADS5 mRNA for PgMADS protein5, complete cds. | |||
| GenBank | Z46612 | 1e-56 | Z46612.1 P.ginseng gag2 mRNA for agamous 2. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_028062146.1 | 4e-62 | floral homeotic protein AGAMOUS-like | ||||
| Swissprot | Q40872 | 4e-60 | AG_PANGI; Floral homeotic protein AGAMOUS | ||||
| TrEMBL | A0A2R6QAE1 | 1e-82 | A0A2R6QAE1_ACTCH; Floral homeotic protein like | ||||
| STRING | XP_006449577.1 | 2e-51 | (Citrus clementina) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA40 | 24 | 625 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G58780.3 | 2e-51 | MIKC_MADS family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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