PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn090241
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 242aa    MW: 26599.8 Da    PI: 6.7812
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn090241genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.20.000171912281154
                 HHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
         HLH  11 rRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                 + R+++++    L+ ++P  +      +++ +++L +Av+Y+ksL
  Achn090241 191 K-RQKMRKMVKVLQGIVPDgN------RMNTVAVLDEAVKYLKSL 228
                 4.6899999999999999955......9***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.81179228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.4E-6186234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-7188235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.81E-6188233No hitNo description
SuperFamilySSF474599.16E-8188235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MQSDQQLFPQ NPTFPISPIS NQVGGSYMHS APNASAFGGT ILPTGLKHSG AIHGIAFQPS  60
ELCPKNFIIF DQSQNRSQIM FHPVIAPQFC YPGFNIPSSY IHDNVERETN TEKEAPSSLR  120
ENLTDIDALL SLEEEEQEEC EEEEVSTARK HRNYGSDSSD SCSSYGSKPK KSRLSSSQKS  180
SGSGNSCSER KRQKMRKMVK VLQGIVPDGN RMNTVAVLDE AVKYLKSLKI EAQKLGVTNL  240
P*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1189195RKRQKMR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028100467.11e-107transcription factor bHLH144
TrEMBLA0A2R6PY461e-136A0A2R6PY46_ACTCH; Transcription factor bHLH144 like
STRINGXP_002519719.12e-84(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA81241924
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29950.29e-28bHLH family protein