PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn090351
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB_related
Protein Properties Length: 373aa    MW: 43237.6 Da    PI: 7.2431
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn090351genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.62.8e-08166206346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +WTteE e++ + ++++G + Wk  a t+g  + + ++k+ w+ 
       Achn090351 166 SWTTEELEIIQKHHEEHGAK-WKELAYTLG--KNRVHLKDTWRR 206
                      7*******************.********9..789999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.001690161IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-793180IPR009057Homeodomain-like
SMARTSM007170.33163210IPR001005SANT/Myb domain
SuperFamilySSF466899.66E-8165223IPR009057Homeodomain-like
PROSITE profilePS500906.667166208IPR017877Myb-like domain
PfamPF139211.5E-10167225No hitNo description
Gene3DG3DSA:1.10.10.601.8E-6181217IPR009057Homeodomain-like
PROSITE profilePS500907.875209277IPR017877Myb-like domain
SMARTSM007174.7213279IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-7218279IPR009057Homeodomain-like
SuperFamilySSF466897.94E-6257339IPR009057Homeodomain-like
PROSITE profilePS500907.039279332IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MVEELHNEST VVANNGIGDD KDSTHSIRKK EKNGSKGNRN KQNSVGTDFE NPKPKVKSKK  60
VRFSGEVEVF PSSDGPSKGK EKNQVEKLVQ GKRFSPEEDE MVKESVFNYI EDHDLGEEGL  120
HMVLHCRSYP KVKNCWKEIG AVLPHRPYTS IYYRAHSLFE RGEDRSWTTE ELEIIQKHHE  180
EHGAKWKELA YTLGKNRVHL KDTWRRIKLP NRKKGHWSQE EYQGLFDLVN MDLSMKAFEE  240
KKTKHGMLRD NISWGAISDK LSTRIDANCC EKWYSQLTSP MVAEGDWANT DDYRLLIALF  300
NLDACCIEDV DWDNLLDHRS GDVCRKRWNQ MVKHIGKHGT KSFTEQVEIL SRRYCPDILE  360
EREAWDSKPA VS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028102458.10.0DNA-binding protein REB1-like
TrEMBLA0A2R6PY550.0A0A2R6PY55_ACTCH; Cyclin-D-binding Myb-like transcription factor
STRINGXP_006488047.11e-165(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10291429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-139MYB_related family protein