PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn091361

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

LBD

Protein Properties

Length: 227aa MW: 25184.6 Da PI: 6.7504

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn091361	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	137.9	3.6e-43	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk++rrkC+++Cv+apyfp +qp+kf+ vhk+FGasnv+k+l++l+ +reda++sl+yeAear+rdPvyG+vg+i+ lqq+l+q++ +l +k+ Achn091361 7 PCAACKLQRRKCTQECVFAPYFPPDQPQKFETVHKVFGASNVSKILNDLSAAQREDAVNSLAYEAEARLRDPVYGCVGLISILQQRLKQVQIDLYNAKK 105 7*******************************************************************************************9998887 PP DUF260 100 e 100 e Achn091361 106 E 106 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.955	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.1E-42	7	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MSTTASPCAA CKLQRRKCTQ ECVFAPYFPP DQPQKFETVH KVFGASNVSK ILNDLSAAQR 60 EDAVNSLAYE AEARLRDPVY GCVGLISILQ QRLKQVQIDL YNAKKELAAY IGPSAMFPIF 120 QPPNNTSFNA HQQSQQQILE AQQMAAVLSA REQQEVLRFN QMSMTSLGLG GFEPIQQISP 180 QEQCHQIQIQ SEVLVQQQPA MGMMQQERAG SGSEEGRGFV RRVDAF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-46	5	110	9	114	LOB family transfactor Ramosa2.1
5ly0_B	1e-46	5	110	9	114	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269\|PubMed:12787254, ECO:0000269\|PubMed:15821980}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017240569.1	4e-75	PREDICTED: LOB domain-containing protein 36-like
Swissprot	Q9FKZ3	3e-68	LBD36_ARATH; LOB domain-containing protein 36
TrEMBL	A0A2R6PAI6	1e-146	A0A2R6PAI6_ACTCH; LOB domain-containing protein
STRING	VIT_00s1247g00010.t01	2e-74	(Vitis vinifera)
STRING	VIT_07s0197g00020.t01	9e-74	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	4e-70	ASYMMETRIC LEAVES 2-like 1

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana. Plant Mol. Biol., 2016. 92(6): p. 661-674 [PMID:27605094]