PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn091661

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

bHLH

Protein Properties

Length: 235aa MW: 27437.3 Da PI: 8.6206

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn091661	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.7	5.6e-05	80	117	5	47
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekA 47 h ++Er RR++ +++++ L +llP+ +K K +i+ A Achn091661 80 HMINERMRREKEKHSYSALHSLLPPG-----TKRCKNSIVNAA 117 7899********************95.....455555555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.96E-9	73	138	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.969	75	124	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.82E-4	79	126	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.1E-5	80	140	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MEEFFRFDLP ENFFWVEQEI LPATNQSAFE RYEDRGNGWV PKSSSRNVNK RMIEFMRRNW 60 NPPPTTERTE IDEREKGFRH MINERMRREK EKHSYSALHS LLPPGTKRCK NSIVNAAAKE 120 LQELRDYREE LERENREIEA ILAVSREREK LIAEGAKIRL RVANPSSGIV SMVEVLKCLK 180 KMGSTTSCIQ SKFSAQELSA VLEIGPEIEA AEVEKAVQKT LFQVERKLHC YFQR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028099372.1	6e-72	transcription factor bHLH92 isoform X1
Refseq	XP_028099373.1	3e-72	transcription factor bHLH92 isoform X2
TrEMBL	A0A2R6Q3F1	1e-167	A0A2R6Q3F1_ACTCH; Transcription factor bHLH92 like
STRING	EMJ28464	1e-62	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12463	18	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43650.1	4e-31	bHLH family protein