PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn091861
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family BBR-BPC
Protein Properties Length: 236aa    MW: 25763.5 Da    PI: 10.2125
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn091861genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind252.72.4e-7761235125301
   GAGA_bind 125 elreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCY 223
                  ++ +e +++++ e+++++ak+kk++ k+ ++k pk+   k+++kk+++skk++++ +  + +k e+k++++v n+ +lD s++P+P CsCtG+ r CY
  Achn091861  61 VTPMTEPINNTEFETNPTKAKKKKSSAKSPNQKAPKVLSPKQPQKKPSASKKSKRQLE--PGTKVERKNLNIVFNEANLDFSGVPPPYCSCTGVDRSCY 157
                 3667788899999999999999999999999999***999999998888865555544..78************************************* PP

   GAGA_bind 224 kWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                 kWG+GGWqS+CCt++iS yPLP+s+ r+gaR+agrKmS ga+ klL +L aeG+dls+pvDLk+hWA+HGtnkfvti+
  Achn091861 158 KWGAGGWQSSCCTINISEYPLPMSSSRPGARLAGRKMSIGAYGKLLCRLGAEGHDLSHPVDLKNHWARHGTNKFVTIK 235
                 *****************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012264.0E-7726235IPR010409GAGA-binding transcriptional activator
PfamPF062176.1E-7064235IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MGTYDNRNPM ISEPNMEASV PYFSWMNPGN FFSATKVGLN PFQASQMDPN PGLSALPICS  60
VTPMTEPINN TEFETNPTKA KKKKSSAKSP NQKAPKVLSP KQPQKKPSAS KKSKRQLEPG  120
TKVERKNLNI VFNEANLDFS GVPPPYCSCT GVDRSCYKWG AGGWQSSCCT INISEYPLPM  180
SSSRPGARLA GRKMSIGAYG KLLCRLGAEG HDLSHPVDLK NHWARHGTNK FVTIK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028058471.11e-118protein BASIC PENTACYSTEINE7-like
SwissprotO822865e-68BPC7_ARATH; Protein BASIC PENTACYSTEINE7
TrEMBLA0A2R6Q3A71e-174A0A2R6Q3A7_ACTCH; Protein BASIC like
STRINGcassava4.1_015308m4e-94(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA137141415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35550.43e-64basic pentacysteine 7