PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn092131
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HD-ZIP
Protein Properties Length: 198aa    MW: 23124.3 Da    PI: 9.0033
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn092131genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.21.2e-1782136256
                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 rk+ ++tk+q++ Lee F+++ ++++ +++ LA+kl+L  rqV vWFqNrRa+ k
  Achn092131  82 RKKLRLTKQQTTLLEESFKRHTTLNQVQKQTLAAKLNLRIRQVEVWFQNRRARTK 136
                 78889************************************************98 PP
2HD-ZIP_I/II1055.8e-3482169188
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                  +kk+rl+k+q +lLEesF+++++L++ +K++la +L+l+ rqv+vWFqnrRARtk+kq E+++e Lk+++++l++en+rL+ke +eLr
   Achn092131  82 RKKLRLTKQQTTLLEESFKRHTTLNQVQKQTLAAKLNLRIRQVEVWFQNRRARTKSKQSEVECELLKKWCESLSHENRRLQKELRELR 169
                  69***********************************************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-1663139IPR009057Homeodomain-like
SuperFamilySSF466892.8E-1773139IPR009057Homeodomain-like
PROSITE profilePS5007116.82778138IPR001356Homeobox domain
SMARTSM003894.1E-1380142IPR001356Homeobox domain
CDDcd000864.61E-1382139No hitNo description
PfamPF000464.6E-1582136IPR001356Homeobox domain
PROSITE patternPS000270113136IPR017970Homeobox, conserved site
PfamPF021837.2E-7138169IPR003106Leucine zipper, homeobox-associated
SMARTSM003402.9E-13138181IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MGVGGLVPKC DRTKKEEVVC LGLSIPLHSK EESIDHDEGN CYIRREEGSC SKTIFEEYKF  60
GPTSNKWNPI NDDDQNKNNC SRKKLRLTKQ QTTLLEESFK RHTTLNQVQK QTLAAKLNLR  120
IRQVEVWFQN RRARTKSKQS EVECELLKKW CESLSHENRR LQKELRELRL FNLDQRHDQL  180
PMAVTLTICP SCSQQHQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18086SRKKLRL
2130138RRARTKSKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028114528.14e-54homeobox-leucine zipper protein HAT22-like
SwissprotP466042e-43HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A1U7VN605e-49A0A1U7VN60_NICSY; homeobox-leucine zipper protein HAT9-like
STRINGXP_009630679.12e-50(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.14e-27HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]