PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn093001
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family TALE
Protein Properties Length: 255aa    MW: 28933.6 Da    PI: 6.5906
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn093001genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.71.7e-072032362154
                 HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
    Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                 k +yp+++++++L +++gL+ +q+ +WF N+R +
  Achn093001 203 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 236
                 469*****************************87 PP
2ELK26.61.4e-09157178122
         ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                 ELK +L++++++++ ++++E++
  Achn093001 157 ELKIELKQGFRSRIEDVREEIL 178
                 9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.0E-192165IPR005540KNOX1
PfamPF037901.0E-172264IPR005540KNOX1
PROSITE profilePS512139.184157177IPR005539ELK domain
PROSITE profilePS5007111.71177240IPR001356Homeobox domain
SuperFamilySSF466892.52E-16179243IPR009057Homeodomain-like
SMARTSM003895.3E-11179244IPR001356Homeobox domain
CDDcd000869.06E-12180241No hitNo description
Gene3DG3DSA:1.10.10.603.1E-25184242IPR009057Homeodomain-like
PfamPF059208.5E-18197236IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MGTSGGGGIG GLADFSDEQH GQMKAEIAAH PLYEQLLAAH VACLRVATPI DQLPLIDSQL  60
SQSHNLLRAY ASQHHHPLSP HERQELDNFL VFWIYQFLVL GVSLGEGTGA TMSDDEDELQ  120
MDFSFDQTGP EGHDLMGFGP LLPTESERSL MERVRQELKI ELKQGFRSRI EDVREEILRK  180
RRAGKLPGDT TSVLKNWWQQ HAKWPYPTED DKAKLVEETG LQLKQINNWF INQRKRNWHS  240
NSQSVTALKS KRKR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A5e-13180236864Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1233253RKRNWHSNSQSVTALKSKRKR
Functional Description ? help Back to Top
Source Description
UniProtPossible developmental regulator.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By wounding; up to 7-fold increase.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028060450.11e-150homeobox protein HD1-like
SwissprotP466061e-129HD1_BRANA; Homeobox protein HD1
TrEMBLA0A2R6Q8881e-165A0A2R6Q888_ACTCH; Homeobox protein
STRINGEOY245901e-148(Theobroma cacao)
STRINGXP_007158449.11e-148(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67732329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-130KNOTTED-like homeobox of Arabidopsis thaliana 7
Publications ? help Back to Top
  1. Boivin R,Hamel F,Beauseigle D,Bellemare G
    Stage-specific transcription of the homebox gene Bnhd1 in young tissues and flowers of Brassica napus.
    Biochim. Biophys. Acta, 1994. 1219(1): p. 201-4
    [PMID:7916213]