PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn093311

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

NAC

Protein Properties

Length: 304aa MW: 35855.4 Da PI: 8.5233

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn093311	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	160.2	8e-50	4	127	7	129
NAM 7 FhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvgl 102 FhPtdeelv++yL+kkv++++++l +vik+vd+yk+ePwdL++ k+ + e++ewyfFs++dkky+tg+r+nratk+g+Wkatg+dk+++s k++l+g+ Achn093311 4 FHPTDEELVDYYLRKKVASRRIDL-DVIKDVDLYKIEPWDLQElcKIGTeEQNEWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKSIYS-KHSLIGM 100 **********************.9***********954555552555**********************************.8899* PP NAM 103 kktLvfykgrapkgektdWvmheyrle 129 +ktLvfykgrap+g+k+d +mheyrle Achn093311 101 RKTLVFYKGRAPNGHKSDCIMHEYRLE 127 *************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	51.897	1	147	IPR003441	NAC domain
Pfam	PF02365	3.3E-23	3	126	IPR003441	NAC domain
SuperFamily	SSF101941	1.31E-53	4	147	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MKTFHPTDEE LVDYYLRKKV ASRRIDLDVI KDVDLYKIEP WDLQELCKIG TEEQNEWYFF 60 SHKDKKYPTG TRTNRATKAG FWKATGRDKS IYSKHSLIGM RKTLVFYKGR APNGHKSDCI 120 MHEYRLETNE NRTYQEEGWV VCKVFKKRMP TTCKMGEHKS PCWYNHDRVS FMPDFDSPCQ 180 FSQTYNSSYH QNHSFKQEVK LHYNIMPNDP FGLKLPWLES PKVAQNGNAL QTSTITQDQK 240 HKDQNIKLVY SNNEEVVDQL TDWRVLDKFV ASQLSHEDSS KRQEIGSDYT STTNPMYPID 300 MWK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-44	4	148	21	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:25148240}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028069414.1	1e-158	NAC domain-containing protein 7-like
Refseq	XP_028069415.1	1e-158	NAC domain-containing protein 7-like
Swissprot	Q9FWX2	1e-116	NAC7_ARATH; NAC domain-containing protein 7
TrEMBL	A0A2R6Q836	0.0	A0A2R6Q836_ACTCH; NAC domain-containing protein
STRING	VIT_02s0154g00020.t01	1e-148	(Vitis vinifera)
STRING	EOY24430	1e-148	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA134	24	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12260.1	1e-119	NAC 007

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]