PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn093351
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family FAR1
Protein Properties Length: 137aa    MW: 16087.8 Da    PI: 4.4145
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn093351genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR138.73.2e-1270116248
        FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkkt 48 
                 fYn+Y+k++GF vrk   +ksk++g +++ +f C keg+ree+ kk+
  Achn093351  70 FYNRYSKTMGFGVRKGGVRKSKKDGCVIDCRFFCFKEGFREERYKKN 116
                 9*****************************************99983 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-970116IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MVYGLEYFDT EIYDEEEHID ELHGHEEHAG DDTEDRLEDL NMENKEIDVN NVEKPYVGMK  60
FESNDDAYVF YNRYSKTMGF GVRKGGVRKS KKDGCVIDCR FFCFKEGFRE ERYKKNAAIK  120
KGITEGLEFD VEQEYM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010660647.13e-17PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3
RefseqXP_010660648.13e-17PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3
TrEMBLA0A1R3FXA41e-18A0A1R3FXA4_9ROSI; Uncharacterized protein
STRINGVIT_14s0068g00770.t012e-16(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-08FAR1-related sequence 5