PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn093911
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family M-type_MADS
Protein Properties Length: 710aa    MW: 78033.1 Da    PI: 7.0187
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn093911genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.43.4e-27958150
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                krienk+ rqvt+skRrng++KKA+ELSvLCd++va+++fs++g+l  +s
  Achn093911  9 KRIENKTSRQVTYSKRRNGLIKKAYELSVLCDIDVALVMFSPSGRLSQFS 58
                79********************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.436161IPR002100Transcription factor, MADS-box
SMARTSM004323.3E-37160IPR002100Transcription factor, MADS-box
CDDcd002652.80E-32258No hitNo description
SuperFamilySSF554552.49E-26265IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-25323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.9E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-253859IPR002100Transcription factor, MADS-box
SuperFamilySSF533832.89E-112306700IPR015424Pyridoxal phosphate-dependent transferase
PfamPF001554.1E-72334696IPR004839Aminotransferase, class I/classII
CDDcd006099.83E-111336698No hitNo description
Gene3DG3DSA:3.40.640.102.4E-75347575IPR015421Pyridoxal phosphate-dependent transferase, major region, subdomain 1
PROSITE patternPS001050537550IPR004838Aminotransferases, class-I, pyridoxal-phosphate-binding site
Gene3DG3DSA:3.90.1150.102.7E-36576703IPR015422Pyridoxal phosphate-dependent transferase, major region, subdomain 2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009095Biological Processaromatic amino acid family biosynthetic process, prephenate pathway
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009570Cellular Componentchloroplast stroma
GO:0003677Molecular FunctionDNA binding
GO:0004069Molecular FunctionL-aspartate:2-oxoglutarate aminotransferase activity
GO:0030170Molecular Functionpyridoxal phosphate binding
GO:0033853Molecular Functionaspartate-prephenate aminotransferase activity
GO:0033854Molecular Functionglutamate-prephenate aminotransferase activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 710 aa     Download sequence    Send to blast
MGRVKLQIKR IENKTSRQVT YSKRRNGLIK KAYELSVLCD IDVALVMFSP SGRLSQFSGK  60
RSAFEPEVQE LTTLEEIESC EKNLMQMLER IMQRKRYLMG EQLSLYDPSS VEVNSFGQML  120
FEAQKGMPST SSFQSELVNW LPERGVNQNN IFGGSYIPIR GSSQATIYSQ LSHANEEPNS  180
VNGGTIDNPR NGHSISRWHF SSLMPPSASF PQQDQMEDVA EVEQLQQAEV TPKPVTGSPS  240
NASRHQFVGA TCSSYSDIFR SVSFSSHLPD FSLKSLENTK PIQTQRITAV VRPVSCYKQM  300
EVDISLSPRV NSVKPSKTVA ITDQARSLLE AGVPVIGLAV GEPDFDTPAV IAEAGINAIR  360
EGYTRYTPNA GTLELRKAIC HNLKEENGIS YTPDQILVSN GAKQSVLQAM VAFCSPGDEV  420
IIPAPYWVSY PEIARLADAT PVILSTNISE NFLLDPELLE SKITDKSRVL ILCSPSNPTG  480
SVYPRKLLEK IAQIVARHPR LLVLCDEIYE HIIYAPATHT SFASLPGMWE RTLTVNGFSK  540
AFAMTGWRLG YLAAPKHFTT ACGKIQSQLT SGASSISQKA GVAALGMGYA GGEAVSTMVK  600
AFKERRDYLI ESFGELDGVK MSEPQGAFYL FLDFSSYYGM EVEGFGMIKD SESLCRYLLE  660
KAQVALVPGD AFGDDRCVRI SYATSLSTLR AAMDKIKKAL ISLRPAVPV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wmh_A0.028470949475Bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase
5wmh_B0.028470949475Bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase
5wmh_C0.028470949475Bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase
5wmh_D0.028470949475Bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase
5wmh_E0.028470949475Bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase
5wmh_F0.028470949475Bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase
6f5v_A0.028470949475Bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase
6f5v_B0.028470949475Bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase
6f5v_C0.028470949475Bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase
6f5v_D0.028470949475Bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProkaryotic-type aspartate aminotransferase. Has also a prenate transaminase activity. Involved in the aromatic amino acids biosynthesis pathway via the arogenate route. Required for the transamination of prephenate into arogenate. Can use 2-oxoglutarate, oxaloacetate and prephenate as substrates, but not phenylpyruvate or 4-hydroxyphenylpyruvate. {ECO:0000269|PubMed:21102469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028125187.10.0bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase
SwissprotE9L7A50.0PAT_PETHY; Bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase
TrEMBLA0A2R6S3B10.0A0A2R6S3B1_ACTCH; Bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase
STRINGEOX921770.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.13e-28AGAMOUS-like 104
Publications ? help Back to Top
  1. Maeda H,Yoo H,Dudareva N
    Prephenate aminotransferase directs plant phenylalanine biosynthesis via arogenate.
    Nat. Chem. Biol., 2011. 7(1): p. 19-21
    [PMID:21102469]