PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn095321
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NAC
Protein Properties Length: 406aa    MW: 45678.8 Da    PI: 7.272
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn095321genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.43.5e-50211752128
         NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...........................kvkaeekewyfFskrdkkyatgkr 73 
                 ppGfrFhPtdeel+++yL++kv + ++     i+evd++++ePwdLp                             +k +++ewyfFs rd+ky+tg r
  Achn095321  21 PPGFRFHPTDEELITFYLAAKVFNGTFCG-VDIAEVDLNRCEPWDLPVrvrttlnqhpfefiiektnnsclccadVAKMGDREWYFFSMRDRKYPTGLR 118
                 8*************************877.34***************5589*************999999998875566999***************** PP

         NAM  74 knratksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                 +nrat +gyWkatgkd+ev+s+  +g l g+kktLvfykgrap+gekt+Wvmheyrl
  Achn095321 119 TNRATGAGYWKATGKDREVYSSgpSGGLLGMKKTLVFYKGRAPRGEKTKWVMHEYRL 175
                 *********************9888889***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-551365IPR003441NAC domain
PROSITE profilePS5100555.24620197IPR003441NAC domain
PfamPF023652.0E-2721175IPR003441NAC domain
SuperFamilySSF1019413.66E-5593197IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MLDVEDVLSE LNEDINEQGW PPGFRFHPTD EELITFYLAA KVFNGTFCGV DIAEVDLNRC  60
EPWDLPVRVR TTLNQHPFEF IIEKTNNSCL CCADVAKMGD REWYFFSMRD RKYPTGLRTN  120
RATGAGYWKA TGKDREVYSS GPSGGLLGMK KTLVFYKGRA PRGEKTKWVM HEYRLDGHFS  180
YRHMSKEEWV ICRIFHKKGE KKNPFYQGQS HLLEAAASPP TMGSLPPLLE AQSHNPMKAL  240
QNHPFPIHHH QDGDLKTLTN QVFPQSSFSP TPSPNNGINT NTNYHHPSPS MLFKSLASHQ  300
VCTLKEQPIT VPKQCKTEAN FYPFQLPDAN LRWLHRIHCD PHANPTLFLG MDFGGLMGFS  360
SATADATTTA AAPVSEMSTS IVFNNACVNP LIRSSVTGES WPLDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-4512003171Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00241DAPTransfer from AT1G76420Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010663998.11e-153PREDICTED: protein CUP-SHAPED COTYLEDON 3
SwissprotQ9S8511e-88NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBLA0A2R6PZA40.0A0A2R6PZA4_ACTCH; Protein CUP-SHAPED COTYLEDON 3 like
STRINGEOY159121e-152(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15224279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.12e-90NAC family protein
Publications ? help Back to Top
  1. Chen C, et al.
    Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.).
    J. Exp. Bot., 2014. 65(17): p. 4943-58
    [PMID:24962999]
  2. Gonçalves B, et al.
    A conserved role for CUP-SHAPED COTYLEDON genes during ovule development.
    Plant J., 2015. 83(4): p. 732-42
    [PMID:26119568]
  3. Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
    SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis.
    Plant J., 2017. 90(3): p. 435-446
    [PMID:28161901]
  4. Espinosa-Ruiz A, et al.
    TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana.
    Development, 2017. 144(9): p. 1619-1628
    [PMID:28320734]
  5. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]