PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn096501
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C3H
Protein Properties Length: 424aa    MW: 46738.1 Da    PI: 7.937
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn096501genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.64.2e-08171195126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 +kt+lC+ f++ GtC+y  +C+FaH+
  Achn096501 171 FKTKLCCKFRA-GTCPYITNCNFAHS 195
                 69*********.*************8 PP
2zf-CCCH32.81.1e-10302327126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 +kt++C+ +  tG C++G++C+FaHg
  Achn096501 302 WKTRICNKWELTGCCPFGNKCHFAHG 327
                 8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.108.3E-14168202IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.81E-8168201IPR000571Zinc finger, CCCH-type
SMARTSM003560.0035170196IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.84170197IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-5171195IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-8239269IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-7240269IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.328241269IPR000571Zinc finger, CCCH-type
SMARTSM003560.13241268IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-16297331IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-9298332IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.84301329IPR000571Zinc finger, CCCH-type
SMARTSM003566.6E-8301328IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-8302327IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MSFHYTPHPI TCSLFPLPVT PCELERDSRK KDDLWGKRGR HSGKKATNDA MEGFVVIAFS  60
YLSVSENKKI GYWLVLAMDY GRETGFSSGN VVQVFTGPHS NGGGENWGLG AVDQAVWATE  120
DDYGACYRET SVDTTSNSDP QTRSGSEPPI KKSRNSRSCD TRSKAIGKMF FKTKLCCKFR  180
AGTCPYITNC NFAHSIEELR RLPPNWQAIV SAHKEASSEP REEFKIPSLD SSAFIGETPR  240
SYKGRHCKKF YSEEGCLYGD NCTFLHDEQS KARESVAISL GPGSGGGYGD SANGSSVNPS  300
NWKTRICNKW ELTGCCPFGN KCHFAHGAQE LHRYGGGLAE TEDRDPSSAP PEVKHGFVPS  360
KTPADTVVAS FTPIPHSDGY HNIGVPSQRL SNVIQRTGQR PHQKWKGPDK ISRIYGDWID  420
DIE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028118033.10.0zinc finger CCCH domain-containing protein 12-like
SwissprotQ84UQ31e-114C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A2R6QPF40.0A0A2R6QPF4_ACTCH; Zinc finger CCCH domain-containing protein
STRINGXP_010240878.11e-161(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37292343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-114C3H family protein