PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn096741
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ARR-B
Protein Properties Length: 711aa    MW: 78961.1 Da    PI: 6.9775
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn096741genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like26.21.8e-08244264222
     G2-like   2 prlrWtpeLHerFveaveqLG 22 
                 +r++Wt +LH++Fv av+qLG
  Achn096741 244 TRVVWTVDLHRKFVAAVNQLG 264
                 79******************6 PP
2Response_reg78.72e-26711791109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl vdD+p+ ++ll+++l+k +y +v++++++  al+ll+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++a+g+ +++ + ++ Ga 
    Achn096741  71 VLAVDDDPICLKLLETLLRKCQY-HVTTTSQAIMALKLLRENKnnFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSAYGDTKLVMKGISHGAC 165
                   799********************.***************888888*******************87754.558************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ +eel +
    Achn096741 166 DYLLKPVRIEELKN 179
                   ***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521722.99E-3668192IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.1E-4368192No hitNo description
SMARTSM004489.0E-3369181IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.6470185IPR001789Signal transduction response regulator, receiver domain
PfamPF000727.9E-2471179IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.98E-2872184No hitNo description
Gene3DG3DSA:3.40.50.23001.1E-43224244No hitNo description
Gene3DG3DSA:1.10.10.608.9E-8245266IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 711 aa     Download sequence    Send to blast
MASNKSTRVI FVNFTIEVER EYGSEIERIA LSRVKPLRSE FLVYFAISAE KMTIDRSFVE  60
PNDQFPLGMR VLAVDDDPIC LKLLETLLRK CQYHVTTTSQ AIMALKLLRE NKNNFDLVIS  120
DVHMPDMDGF KLLELVGLEM DLPVIMLSAY GDTKLVMKGI SHGACDYLLK PVRIEELKNI  180
WQHVVRRKKT DSKEQNNSDK PCHETEGGQA VTVTGDSDQN GKLNRKKRDQ KEDENEDQST  240
QKRTRVVWTV DLHRKFVAAV NQLGIDIKYC TFPDLSVRFE ELLNVKKYRL YLKRISVVAS  300
HQANMIAASG GADSPYLQMG FLNGLGNVPS MVGSAQFQNT DVRSLSSSGM LGRLNTPAGL  360
GMRGLSSSGM VQLGHADNLI NPINNQNKFH EVILPGNQNG NIQGMPTPFE FDQLQHKNGV  420
DHIGDLSSAN NDSMVFPISS GLSDGNMNGN SSRNSFLGAP HNPVMLQGQP QGIKRDELCG  480
NQSFVTVASS NREYSSRLAD FRGCIDSWPA VQASEIQSIS FTSNDCFKQD TRSYLMDRKS  540
SIAMDTGNKS NNNSSIAVVP AGFPVLRTDL QSQAAPRQQS NAEQNMNHTQ KQGWDENKQN  600
PSHGPNLMCS FLNSMIPPHV PDPFSQRLDL ENTICHRNAN GNNMIGQRNL VDSSTVQHNE  660
VEQSAIGTTA KPKQGNLINQ RKPQDGYSFD DVGSLEDLVT AMMKQVRLQT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3jte_A7e-12701895125Response regulator receiver protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the root-meristem size determination through the regulation of cell differentiation (PubMed:17363254). Involved in activating SHY2 during meristem growth and controls PIN expression via activation of SHY2 (PubMed:20605455). {ECO:0000250|UniProtKB:Q940D0, ECO:0000269|PubMed:17363254, ECO:0000269|PubMed:20605455}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028073237.10.0two-component response regulator ARR12-like
SwissprotP625981e-116ARR12_ARATH; Two-component response regulator ARR12
TrEMBLA0A2R6PJ170.0A0A2R6PJ17_ACTCH; Two-component response regulator
STRINGVIT_04s0008g05900.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22582458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-105response regulator 12
Publications ? help Back to Top
  1. Takahashi N, et al.
    Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots.
    Curr. Biol., 2013. 23(18): p. 1812-7
    [PMID:24035544]
  2. Cortleven A, et al.
    A novel protective function for cytokinin in the light stress response is mediated by the Arabidopsis histidine kinase2 and Arabidopsis histidine kinase3 receptors.
    Plant Physiol., 2014. 164(3): p. 1470-83
    [PMID:24424319]
  3. Kim HJ,Kieber JJ,Schaller GE
    The rice F-box protein KISS ME DEADLY2 functions as a negative regulator of cytokinin signalling.
    Plant Signal Behav, 2013. 8(12): p. e26434
    [PMID:24675172]
  4. Choi SH, et al.
    Gene duplication of type-B ARR transcription factors systematically extends transcriptional regulatory structures in Arabidopsis.
    Sci Rep, 2014. 4: p. 7197
    [PMID:25425016]
  5. Jiang L, et al.
    Strigolactones spatially influence lateral root development through the cytokinin signaling network.
    J. Exp. Bot., 2016. 67(1): p. 379-89
    [PMID:26519957]
  6. Cortleven A, et al.
    Cytokinin Regulates the Etioplast-Chloroplast Transition through the Two-Component Signaling System and Activation of Chloroplast-Related Genes.
    Plant Physiol., 2016. 172(1): p. 464-78
    [PMID:27388681]
  7. Kobayashi K, et al.
    Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling.
    Plant Physiol., 2017. 173(4): p. 2340-2355
    [PMID:28193764]
  8. Zhang TQ, et al.
    A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
    Plant Cell, 2017. 29(5): p. 1073-1087
    [PMID:28389585]
  9. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]
  10. Kobayashi K,Iwase A
    Simultaneous but spatially different regulation of non-photosynthetic callus formation and photosynthetic root development after shoot removal.
    Plant Signal Behav, 2017. 12(6): p. e1338999
    [PMID:28594268]
  11. Dai X, et al.
    ARR12 promotes de novo shoot regeneration in Arabidopsis thaliana via activation of WUSCHEL expression.
    J Integr Plant Biol, 2017. 59(10): p. 747-758
    [PMID:28681564]
  12. Zhang F,May A,Irish VF
    Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
    Trends Plant Sci., 2017. 22(10): p. 815-817
    [PMID:28886911]
  13. Yan Z, et al.
    Type B Response Regulators Act As Central Integrators in Transcriptional Control of the Auxin Biosynthesis Enzyme TAA1.
    Plant Physiol., 2017. 175(3): p. 1438-1454
    [PMID:28931628]
  14. Bustillo-Avendaño E, et al.
    Regulation of Hormonal Control, Cell Reprogramming, and Patterning during De Novo Root Organogenesis.
    Plant Physiol., 2018. 176(2): p. 1709-1727
    [PMID:29233938]