PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn099071
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB_related
Protein Properties Length: 155aa    MW: 17437.9 Da    PI: 7.6145
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn099071genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.23.7e-08791022246
                      T-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  22 gtWktIartmgkgRtlkqcksrwqk 46 
                      + W++Ia++++ gRt++++k+ w++
       Achn099071  79 PKWSKIASHFP-GRTDNEIKNCWNT 102
                      48*********.*********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.005835106IPR001005SANT/Myb domain
CDDcd001675.83E-677102No hitNo description
PfamPF002495.6E-677102IPR001005SANT/Myb domain
SuperFamilySSF466892.11E-878109IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.5E-1279108IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MVLAVFALIF DLLIVQENNN LRAALATSDV IELPTQAEIK TVFDKVKDFF GDAKESFGKL  60
TALNVNATEG LEEKPEDKPK WSKIASHFPG RTDNEIKNCW NTRIKKKLKV LGLDPITHKP  120
IERSRVFSTK DKGVLESNSS RNQENNFELN LHDN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.18e-19myb domain protein 20