PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn099771

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

ERF

Protein Properties

Length: 259aa MW: 28559.8 Da PI: 5.1963

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn099771	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	54.5	2.9e-17	88	137	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r ++ +g+Wv+eI++p++ + r++lg+f t+e+Aa+a++ a+ ++g Achn099771 88 IYQGIRKRS-WGKWVSEIWEPRK---KSRIWLGTFATPEMAARAHDVAAITIKG 137 69**888.******843...6********************98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	7.73E-32	87	147	No hit	No description
Pfam	PF00847	1.8E-11	87	137	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.68E-20	88	146	IPR016177	DNA-binding domain
SMART	SM00380	1.2E-35	88	151	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	4.9E-30	88	146	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.089	88	145	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.4E-9	89	100	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.4E-9	111	127	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MAIEEDIDGG TIERERERES IYKSSPPPKS IIHTVSNYDP PIMGLVVDLE CEEQTASSTS 60 STMATAAAAT VSITLKKVQK SDSEKHPIYQ GIRKRSWGKW VSEIWEPRKK SRIWLGTFAT 120 PEMAARAHDV AAITIKGQSA HLNFPDLAHE LPRPASKSPK DIQAAAALAA TLATSRSHEA 180 EAESSQAEST SSQSLDSSTR DSSTSHIIKA DDPFFDLPDL FLNLEHRTND LHYMLTSHLA 240 RDEPFGGEFW PEDLFLWG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	7e-16	86	145	12	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028077791.1	1e-77	ethylene-responsive transcription factor ERF038-like
Swissprot	Q8LBQ7	5e-43	ERF34_ARATH; Ethylene-responsive transcription factor ERF034
Swissprot	Q9ZQP3	3e-44	ERF38_ARATH; Ethylene-responsive transcription factor ERF038
TrEMBL	A0A2R6Q813	1e-151	A0A2R6Q813_ACTCH; Ethylene-responsive transcription factor TINY like
STRING	EOY24281	4e-59	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA212	24	225

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25810.1	7e-42	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]