 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Achn101521 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 275aa MW: 30469.7 Da PI: 10.0431 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Achn101521 | genome | IKGC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 316.6 | 7.8e-97 | 4 | 274 | 14 | 301 |
GAGA_bind 14 yepaaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvenslasalpvgvqvlsgtksidslq 112
y+ +++ + ++++++ +iae+da+i+e n a++ek+aa+ er++af+qrd+a+a r+ al erd++++al ++ens++ l g+++ +gtk +++
Achn101521 4 YQMNEANAIFMNKKIVHIIAEKDAAIEEMNKAIAEKNAALEERNEAFKQRDNAIAARDTALRERDSAIAALRFQENSMNGIL--GYGIQRGTKRAHHPT 100
554433444599****************************************************************977665..89999*******877 PP
GAGA_bind 113 qlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkak.kkkkksekskkkvkkesaderskaekksidl.vlngvslDestlP 209
+ ++ + + pi + + ++++++k+ k++++ +pk++k+ k kk +e+ +++v++++ skae++ +dl +n++ +Des++
Achn101521 101 N-----YHPAP--------AAEVPIASDEIVKSRQAKCAKGKKNVSPKVSKSPkKGKKVGEDLNREVTTNG----SKAEWDAQDLdLINHIYFDESSIA 182
7.....22222........2346666667777777788888888888888775255677777777777777....89********889*********** PP
GAGA_bind 210 vPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
+PvCsCtG++rqCYkWGnGGWqS+CCttt+S yPLP+++++r+aR++grKmS+++f++lL +La++G+dls p+DLk++WAkHGtn+++ti+
Achn101521 183 APVCSCTGKPRQCYKWGNGGWQSSCCTTTLSSYPLPQMPNKRHARMGGRKMSGSVFTRLLTRLASDGHDLSIPLDLKNFWAKHGTNRYITIK 274
*******************************************************************************************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 275 aa
Download sequence Send
to blast |
MPQYQMNEAN AIFMNKKIVH IIAEKDAAIE EMNKAIAEKN AALEERNEAF KQRDNAIAAR 60
DTALRERDSA IAALRFQENS MNGILGYGIQ RGTKRAHHPT NYHPAPAAEV PIASDEIVKS 120
RQAKCAKGKK NVSPKVSKSP KKGKKVGEDL NREVTTNGSK AEWDAQDLDL INHIYFDESS 180
IAAPVCSCTG KPRQCYKWGN GGWQSSCCTT TLSSYPLPQM PNKRHARMGG RKMSGSVFTR 240
LLTRLASDGH DLSIPLDLKN FWAKHGTNRY ITIK*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
