PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn103451

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

WRKY

Protein Properties

Length: 319aa MW: 35762.9 Da PI: 7.4573

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn103451	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	105.9	2.1e-33	158	216	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s+fprsYYrCt+++C vkk+vers++d ++v++tYeg+H+h+ Achn103451 158 LDDGYRWRKYGQKAVKNSPFPRSYYRCTTPTCGVKKRVERSSDDRSIVVTTYEGTHTHP 216 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.1E-34	143	218	IPR003657	WRKY domain
SuperFamily	SSF118290	2.22E-29	150	218	IPR003657	WRKY domain
PROSITE profile	PS50811	30.963	153	218	IPR003657	WRKY domain
SMART	SM00774	1.2E-38	158	217	IPR003657	WRKY domain
Pfam	PF03106	5.9E-27	159	216	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MEKKEETKAE NLMANSTFSN QISTALGLQG IFDMPCEGDV INQKASFGFN MDMFGIQDYC 60 NPSLFDLIQT PVVTPQPAAV SESPEVVNAP ATPNSLSVSS SSTEAANDEQ HTKTTAEDQE 120 QEQDKEKAKK LLKPKKKNPK RAREPRFAFR TRSEVDHLDD GYRWRKYGQK AVKNSPFPRS 180 YYRCTTPTCG VKKRVERSSD DRSIVVTTYE GTHTHPCPLT PRGNIAIMPE SSAFSGNIGT 240 SSFVLPQPQY QQLQQQQQQQ QPYFHNPTPS LSFSTTNSSF PTFQERQFRP SLPSLLRDDG 300 LLQDMIVPSQ VLKNPKEE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	5e-28	150	218	9	77	Probable WRKY transcription factor 4
2lex_A	5e-28	150	218	9	77	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028115186.1	1e-123	probable WRKY transcription factor 48
Swissprot	Q9FGZ4	2e-53	WRK48_ARATH; Probable WRKY transcription factor 48
TrEMBL	A0A2R6PJJ6	0.0	A0A2R6PJJ6_ACTCH; WRKY transcription factor
STRING	VIT_05s0077g00730.t01	1e-105	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1309	24	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49520.1	1e-43	WRKY DNA-binding protein 48

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]