PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn103931
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family WRKY
Protein Properties Length: 576aa    MW: 65170.1 Da    PI: 8.6487
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn103931genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.71.2e-33162219259
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 +Dgy+WrKYGqK vk+s+fprsYYrCt+++C+vkk+vers +dp+vv++tYeg+H h+
  Achn103931 162 EDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCTVKKRVERSFQDPSVVITTYEGQHSHP 219
                 8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.2E-35146221IPR003657WRKY domain
SuperFamilySSF1182903.14E-29153221IPR003657WRKY domain
PROSITE profilePS5081131.984156221IPR003657WRKY domain
SMARTSM007749.3E-40161220IPR003657WRKY domain
PfamPF031063.2E-26162219IPR003657WRKY domain
PfamPF077793.6E-23381509IPR012419Cas1p 10 TM acyl transferase domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0045492Biological Processxylan biosynthetic process
GO:1990937Biological Processxylan acetylation
GO:0005794Cellular ComponentGolgi apparatus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MLTWSPHHPT YNYTKQAGPT YNYTKQARAT KCLPRASHVS GQRSKDGAKS FTECLQGSSD  60
YNTLALAFGL SPPPSEPFSS VKVEQNPVAE GGGETPVTPN SSVSSSSSEA GGDEGKKDRQ  120
QQEFGNGGES SKKVNKSKKK SEKREREPRF AFMTKSEVDH LEDGYRWRKY GQKAVKNSPF  180
PRSYYRCTTQ KCTVKKRVER SFQDPSVVIT TYEGQHSHPI PATLSGNIGG MLPPSMLTTV  240
VPPMEILPDI LNGAISYHIQ VSFMLGFIPI FVAWIFSEFL EYKKSASPSK VHSDINLVEL  300
GNETIKDDDR AILLEGGLTK SASAKLYTPS IKTNLIRFLT MEDSFLLENR LTLRAMSEFG  360
VILVYFYICD RTDLLAESTK VLFLMYHYFA ATEIYNAIRV FIAAYVWMTG FGNFSYYYIR  420
KDFSLARFSQ MMWRLNFFVA FCCIVLNNDY TLYYICPMHT LFTLMVYGAL GIFNKYNEIK  480
SVMAVKILSC FLVVIAIWEI PGIFEILWSP LTFLSDMPNG QPKWLLSLIP EYPMLNFMLT  540
TAIYVLAMFG WLESLVGVKF SLLGIDRPYW ESNGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-281542221078Probable WRKY transcription factor 4
2lex_A1e-281542221078Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A061GD491e-165A0A061GD49_THECC; O-acetyltransferase family protein isoform 4
TrEMBLA0A061GDY91e-165A0A061GDY9_THECC; O-acetyltransferase family protein isoform 5
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18170.14e-54WRKY DNA-binding protein 28