PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn104391
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB_related
Protein Properties Length: 224aa    MW: 25571.6 Da    PI: 7.0798
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn104391genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.92e-171055148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+ T++Ed+l+v+ +++lG++ W++Ia +++ gRt++++k++w+++l
       Achn104391 10 RGNITPDEDDLIVKMHALLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 55
                     7999******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-25159IPR009057Homeodomain-like
SuperFamilySSF466894.34E-16164IPR009057Homeodomain-like
PROSITE profilePS5129427.069559IPR017930Myb domain
SMARTSM007172.7E-16957IPR001005SANT/Myb domain
PfamPF002492.0E-151055IPR001005SANT/Myb domain
CDDcd001672.10E-121455No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MNYLRPDIKR GNITPDEDDL IVKMHALLGN RWSLIAGRLP GRTDNEIKNY WNTHLSKKLR  60
SQGTDPNTHK KLSDPHVQEP KKRKNSNKKK KNNPKPQPQE EPEKLKVHNP KPIRIKPLGS  120
FSMSRNSSFD WTPTTTTTTT TTTASGTEVA DDPWSNFRYN EVGFLIGDDQ DHDMINCSDL  180
ECHSGVPTSN HTLEKLYEEY LQLLKTEDHD HVELDSFAES LLI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-1425951108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028087834.11e-102transcription factor WER-like
TrEMBLA0A2R6R7I51e-163A0A2R6R7I5_ACTCH; Transcription factor like
STRINGEOX956619e-91(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.12e-36myb domain protein 3