PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn104781

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

MYB_related

Protein Properties

Length: 540aa MW: 60994.1 Da PI: 8.5748

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn104781	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	36	1.7e-11	5	55	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT+eE+e l ++ ++G g W+tI + R+ ++k++w++ Achn104781 5 KQKWTPEEEEALRSGIVKHGAGKWRTILKDPEfsgvlYLRSNVDLKDKWRN 55 79*********************************88*********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.012	1	58	IPR017930	Myb domain
SuperFamily	SSF46689	2.44E-15	2	70	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.5E-13	4	56	IPR009057	Homeodomain-like
SMART	SM00717	6.2E-7	4	59	IPR001005	SANT/Myb domain
Pfam	PF00249	2.4E-8	5	55	IPR001005	SANT/Myb domain
CDD	cd11660	9.75E-18	6	56	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 540 aa Download sequence Send to blast
MGAPKQKWTP EEEEALRSGI VKHGAGKWRT ILKDPEFSGV LYLRSNVDLK DKWRNMSVMA 60 NGWDSREKAR LALKRMQPIF KQDENPMALS TVDMDEQLKD NASLISRIHQ LEHECDALHK 120 DIEQLCMQKA GPSYLSVATR MHFQSLQASS LLIMIDKKKG KKKKCDKAEK HVKFFQGCVA 180 AAFAERDHSI MEAGKAKEKE EVMSQKLSNF QRRNQDLKLY VLYWVQLIVF IFISVHIGWV 240 KQGGRATFDF LEEKKLTDAL QCDLEEQNKQ NETLKKVINK FFEIRQYSVN GVCESGSWED 300 KCECLLCDSH EMWDFNNQGK TSTPKYIGNG SGLPNSMAIA SDASEALAQA LQEKRVVLFV 360 VGMWAMACGG LSRKINHEIT QGNFLAEIVV KRIVQERDGR LRNLIKETYL KRWIGRVDSP 420 GNEVEGHLNY KGNKSSIYRM DIARMKIENA TLKESLESME HLTSAICRLT SEGDHSECLS 480 LLKVKESVTS GGTVTGALEA LDDIVGEAKL TRTALEAPFP SAGQLRQIPN CPVKVTTRR*

Sequence ? help Back to Top

Protein Sequence Length: 540 aa Download sequence Send to blast

MGAPKQKWTP EEEEALRSGI VKHGAGKWRT ILKDPEFSGV LYLRSNVDLK DKWRNMSVMA  60
NGWDSREKAR LALKRMQPIF KQDENPMALS TVDMDEQLKD NASLISRIHQ LEHECDALHK  120
DIEQLCMQKA GPSYLSVATR MHFQSLQASS LLIMIDKKKG KKKKCDKAEK HVKFFQGCVA  180
AAFAERDHSI MEAGKAKEKE EVMSQKLSNF QRRNQDLKLY VLYWVQLIVF IFISVHIGWV  240
KQGGRATFDF LEEKKLTDAL QCDLEEQNKQ NETLKKVINK FFEIRQYSVN GVCESGSWED  300
KCECLLCDSH EMWDFNNQGK TSTPKYIGNG SGLPNSMAIA SDASEALAQA LQEKRVVLFV  360
VGMWAMACGG LSRKINHEIT QGNFLAEIVV KRIVQERDGR LRNLIKETYL KRWIGRVDSP  420
GNEVEGHLNY KGNKSSIYRM DIARMKIENA TLKESLESME HLTSAICRLT SEGDHSECLS  480
LLKVKESVTS GGTVTGALEA LDDIVGEAKL TRTALEAPFP SAGQLRQIPN CPVKVTTRR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022896874.1	1e-104	myosin heavy chain, cardiac muscle isoform isoform X2
TrEMBL	A0A2R6RGX4	4e-83	A0A2R6RGX4_ACTCH; Sporulation-specific protein
STRING	POPTR_0009s09030.1	1e-54	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7683	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49950.3	2e-45	telomere repeat binding factor 1