PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn104851
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family LBD
Protein Properties Length: 223aa    MW: 24287.2 Da    PI: 6.7448
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn104851genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26083.43.3e-262114197
      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeer...........edamsslvyeAearardPvyGavgvilkl 83 
                 +C++C+vlr++C+++C+l++ +     p++q++++ +v+k+FG++ ++++l+++p+++r           +++++sl++eA+ r+ +Pv+Gavg++ ++
  Achn104851   2 SCNGCRVLRKGCNENCILRQSIqgiesPQAQANATVFVAKFFGRAGLMSFLSSVPHSQRpgfddwfgdlcTALFQSLLFEACGRTVNPVNGAVGLLGTG 100
                 6************************************************************************************************** PP

      DUF260  84 qqqleqlkaelall 97 
                 +++++q+++e++l+
  Achn104851 101 NWNVCQAAVETVLR 114
                 ********998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.1891118IPR004883Lateral organ boundaries, LOB
PfamPF031958.5E-202112IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MSCNGCRVLR KGCNENCILR QSIQGIESPQ AQANATVFVA KFFGRAGLMS FLSSVPHSQR  60
PGFDDWFGDL CTALFQSLLF EACGRTVNPV NGAVGLLGTG NWNVCQAAVE TVLRGGVLRP  120
IPEYSGDFPA EESDDVSDTN NIDFSGSRDL HVARQKPAAD LGLRPTQEFS ARMTAGGRVK  180
RREETPSFNS DESETTSLES RSAYHQKNLL GRSETKVLRL FF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028125854.11e-91LOB domain-containing protein 37-like
SwissprotQ9SN239e-66LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A2R6Q5U81e-150A0A2R6Q5U8_ACTCH; LOB domain-containing protein
STRINGXP_009795798.13e-88(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9662490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.14e-68LOB domain-containing protein 38