PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn104991
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 265aa    MW: 30108.6 Da    PI: 9.7619
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn104991genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.80.000111521891355
                 HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 R+++ +++  L++l+ +      +K + a++L +A+ YI+ Lq
  Achn104991 152 REKLGERITALQQLVSPY-----GKTDTASVLHEAMGYIRFLQ 189
                 78889999*******999.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF053473.4E-5961IPR008011Complex 1 LYR protein
PROSITE profilePS508889.655139188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.16E-12147200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0026150194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.83E-4152193No hitNo description
Gene3DG3DSA:4.10.280.101.8E-8152195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MIGREMHKAL RAYGEVLRLV KRLPKDTRPY YAKYARENFV NYRDLDPTDS NSLRELLTRT  60
YTHSLWVLNK KKRNGSENLE SMQSFIAWLG APAGNQKNCK KTKSEKSMVT GHGKVSQVDR  120
LGLCMAINFT LSLFFFESRG FCMLDLFDQV KREKLGERIT ALQQLVSPYG KTDTASVLHE  180
AMGYIRFLQE QVQVLCSPYL QRLPSSLHLQ AEERENGEAA ARKDLRSRGL CLVPLECIAH  240
VANNNNGADF WSPATMANNF SPKH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028057156.11e-72transcription factor bHLH113
TrEMBLA0A2R6Q5X31e-105A0A2R6Q5X3_ACTCH; Transcription factor bHLH113 like
STRINGVIT_03s0091g00210.t019e-62(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.13e-45bHLH family protein