PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn105031
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HB-PHD
Protein Properties Length: 933aa    MW: 103904 Da    PI: 4.9726
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn105031genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox35.91.3e-11774821956
                 HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 +  ++ L   F++n+yp ++++e LAk+lg+   qV+ WF N R   +
  Achn105031 774 EAATQGLLISFKENQYPERATKENLAKELGIAVHQVRKWFENARWSFR 821
                 5667778889**********************************8766 PP
2PHD38.62.4e-13406461151
                 SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
         PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                 +C+ Cg+    ++++++lCdg C+++fH+ Cl+++l ++++p +   wlC+ C++k
  Achn105031 406 FCAKCGAkdLRADNDIILCDGaCERAFHQFCLEPPLLKQDIPPDdeGWLCPGCDCK 461
                 6999*9977777********66******************999999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.59E-13396464IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.106.9E-13402461IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.958404461IPR019787Zinc finger, PHD-finger
SMARTSM002491.3E-9406459IPR001965Zinc finger, PHD-type
PfamPF006281.0E-10406461IPR019787Zinc finger, PHD-finger
CDDcd155041.90E-26406458No hitNo description
PROSITE patternPS013590407458IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.604.6E-12754817IPR009057Homeodomain-like
SuperFamilySSF466892.84E-11762825IPR009057Homeodomain-like
PROSITE profilePS5007113.2763823IPR001356Homeobox domain
SMARTSM003891.6E-11765827IPR001356Homeobox domain
CDDcd000861.03E-9766823No hitNo description
PfamPF000464.0E-9774821IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 933 aa     Download sequence    Send to blast
MDATSAQLNC KTGQLSPPTQ KTSIREHEFG SRSLDSEATE EKDAVSTENV NKGSTEARTV  60
ECIYNGIEQL RSHQEDLTIN SSCEQLGKQP EDAAMNSNPE KLGLLTEHTD GKNLSAKQVM  120
SEINYELAPE SSNTEELVEK QNEDHAQNER AETGTREIGC CGLEPSSLPS EDVTKNSSWE  180
QLKPPPGDER ESSLEQLGVP PEDVGVTTSL VQLKPLPNNA SKDCDRQFEL SLEDTANNLI  240
KSGGGGTRTS TKSTKGKHAL RSSVGSTRVL RSRSQEKYKA PEPSNNLPEN GDDPNGEKRR  300
KKKQPIRIKK TPVDEFSRVR KHLRYLLHRI KYEQNLIDAY SGEGWKGQSL EKIKPEKELQ  360
RAKSEIFRCK LKIRDLFQRL DLSIAEGRLP QSLFDSEGQI DSEDIFCAKC GAKDLRADND  420
IILCDGACER AFHQFCLEPP LLKQDIPPDD EGWLCPGCDC KVDCIDLLND SQGTNLSVLD  480
KWERVFPEEA AASAAGKMLD DNLGLPSDDS EDNDYNPDGS EVDVKVEGDE SSSEESDFYS  540
ASEDIGASPK SKQKLEQSSD DSEDDDFDPS APDLDEQVKE ESSSSDFTSD SEDFSVAFDD  600
HRSPRGNESL LDEPKSVSSD HTMPDRGSNG ERSKVGPTKK QTIKDELLSL LESGTDRGES  660
TPVSGRRHVE RLDYKQLYDE TYGNVSSDSS DENWVDATDA PKKRRKHNIE IEGSNTEDMD  720
TNQEESDHTP KRRVRKKLDV EGTNNKTSKS YKASLEHGCS GSSTKRSTYR RLGEAATQGL  780
LISFKENQYP ERATKENLAK ELGIAVHQVR KWFENARWSF RHSAHMKALV ENAPSRGTPP  840
QMSPSVSGPK MVTKDAVNEE NSRRRSTSLR ARKKSRQSEH QTPDHVLGNE ETRKLSAPVD  900
LQNAEEVREK GRPPKAQEKQ RRGRPKSRKS AA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1701705KKRRK
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028118478.10.0pathogenesis-related homeodomain protein-like
SwissprotP487861e-157PRH_PETCR; Pathogenesis-related homeodomain protein
TrEMBLA0A2R6Q5Z20.0A0A2R6Q5Z2_ACTCH; Pathogenesis-related homeodomain protein
STRINGVIT_03s0091g00290.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72202126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.15e-92Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain