PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn105761
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family M-type_MADS
Protein Properties Length: 196aa    MW: 22489.1 Da    PI: 9.4995
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn105761genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.14.8e-181151343
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                i n s r+vt+ kR++g++KK +EL++LCd++v+ ii +++
  Achn105761 11 IANASARKVTLKKRKKGLMKKVSELCTLCDVDVCAIISGPH 51
                89***********************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.7E-22160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.554147IPR002100Transcription factor, MADS-box
CDDcd002662.24E-18285No hitNo description
SuperFamilySSF554552.88E-25295IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-8323IPR002100Transcription factor, MADS-box
PfamPF003192.2E-171151IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-82338IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-83859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MTRKKVNLAY IANASARKVT LKKRKKGLMK KVSELCTLCD VDVCAIISGP HDFQPDVWPS  60
DSGVKRVIER FKTMPELQQH AKMVNQESFT QQRINKAEEL LKKQLKENHR KEMTHVMYQC  120
LNGGGFQYLS MVDLMDLDCL LKQNLKDIER RIELAKKGRP DMTMNEIGRG QNGLNDQMNG  180
FRNNHDDECG KSFVE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVNLAYIANASARKVTLKKRK
22125KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016464483.17e-64PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK32e-50AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A2R6QKZ31e-131A0A2R6QKZ3_ACTCH; Agamous-like MADS-box protein
STRINGPOPTR_0005s00420.16e-64(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15322367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.14e-44AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]