PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn106181
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family WRKY
Protein Properties Length: 509aa    MW: 56218.1 Da    PI: 6.3121
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn106181genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY76.33.5e-2488143260
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                 +Dg+nWrKYGqK v+g  +prsYYrCt+++ +v+kk+ers+ d +++ei+Y+g+H+h+k
  Achn106181  88 EDGFNWRKYGQKLVRG--YPRSYYRCTHPNYHVRKKLERSH-DDHTTEIIYKGSHDHPK 143
                 7**************9..8**********************.999************85 PP
2WRKY44.33.5e-142352751959
                 SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY  19 efprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 +  rsYY+CtsagC+v+k+ve++ +++k +++tYeg+Hn e
  Achn106181 235 TKRRSYYQCTSAGCSVRKHVEKACHNKKSFIVTYEGNHNNE 275
                 567***********************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.3E-2178144IPR003657WRKY domain
PROSITE profilePS5081119.09582144IPR003657WRKY domain
SuperFamilySSF1182909.55E-1983144IPR003657WRKY domain
SMARTSM007742.2E-2287143IPR003657WRKY domain
PfamPF031068.7E-1888142IPR003657WRKY domain
SMARTSM007742.3E-6227276IPR003657WRKY domain
PROSITE profilePS5081117.419232277IPR003657WRKY domain
SuperFamilySSF1182905.36E-11233275IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.2E-13235275IPR003657WRKY domain
PfamPF031069.1E-10235273IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MDGSVRDLFL VCDVGRVGYN SPTRRVRKIN ITSAATAGLE SCIRFDFVAE SVHGEHTDHV  60
VDTAQEHNLH EGDPREMQTL TGDVKTSEDG FNWRKYGQKL VRGYPRSYYR CTHPNYHVRK  120
KLERSHDDHT TEIIYKGSHD HPKPHSKWEL TKPSFLYDEM SEKVEANGSL VEVGLKDIKV  180
GSDWGAAGLE TSTPVLTDSC HLLSNSKLKS RAVETPEISS TLASHAEDDE DKSGTKRRSY  240
YQCTSAGCSV RKHVEKACHN KKSFIVTYEG NHNNEMLCTK NSGHSNLGGG VDGGTLFPAA  300
GSSTGPTPTL PKNANAAESE EQVQDPAFCF ERIPDLGNDF LESSLLGNFS NAMKFEPSSI  360
YQVNFPFSQI STTYGSFLPD FTHSLPLNIP LSASNMEPVD ADFNNHGKSA GSVGYFVGGQ  420
RLRENDARLV KRKQEQNDVT LYDTTLVKPK QEQSDDTLYD SRLVKLKQEQ SDDTLYYTHL  480
LLVDNTNASS STLSSSLVYC GTKGSSPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-13811441177Probable WRKY transcription factor 4
2lex_A9e-13811441177Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023887837.12e-85WRKY transcription factor SUSIBA2-like
TrEMBLA0A2R6PWB50.0A0A2R6PWB5_ACTCH; WRKY transcription factor
STRINGEMJ082081e-82(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.13e-34WRKY family protein