PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn107481

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

TCP

Protein Properties

Length: 161aa MW: 17343.7 Da PI: 9.0467

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn107481	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	84.1	3.4e-26	15	93	8	66
TCP 8 hskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....................s 66 +++h v+gRdRR+R++a caar+F+L++ LG+ + ++tieW lqqa+pai + g+ + Achn107481 15 AKDRHIRVNGRDRRIRIPAACAARVFQLTQILGHRTSGQTIEWILQQAEPAINKVIGNstgvptyapapaanpsypplP 93 69********************************************************777776664433333222220 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	21.372	15	69	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	2.4E-24	15	77	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence Send to blast
MALFNSSSKF KIGTAKDRHI RVNGRDRRIR IPAACAARVF QLTQILGHRT SGQTIEWILQ 60 QAEPAINKVI GNSTGVPTYA PAPAANPSYP PLPSTAMFSA PPEGSTAPTP SGSQASAPMS 120 SVSITEQGLL SFDYDLTDVN YEAIFSTMDF PNMPYHMKHF *

Functional Description ? help Back to Top
Source	Description
UniProt	Can specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269\|PubMed:21297037}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q9C518	2e-22	TCP8_ARATH; Transcription factor TCP8
TrEMBL	A0A2R6PEX2	1e-113	A0A2R6PEX2_ACTCH; Transcription factor like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	6e-14	TCP family protein

Publications ? help Back to Top
Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]