PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn107641

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

NAC

Protein Properties

Length: 388aa MW: 44013.4 Da PI: 8.1518

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn107641	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	158.3	3.2e-49	55	181	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lppGfrFhP+deel+++yL++kv++++l++ ++i e+++y+++Pw+Lp+k+ +e+ewyfF++rd+ky++g+r+nr+++sgyWkatg+dk++l+++ + Achn107641 55 LPPGFRFHPSDEELINCYLQNKVNSRSLPA-SIIGEIELYNYNPWELPRKALFGEDEWYFFTPRDRKYPNGERPNRTAASGYWKATGTDKPILTSGFVK 152 79**************************.89***********87778999**********************************999 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 +g+kk Lvfy+gr pkg ktdW+m+eyrl Achn107641 153 IGVKKALVFYTGRLPKGGKTDWTMNEYRL 181 ***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.31E-58	48	207	IPR003441	NAC domain
PROSITE profile	PS51005	56.524	55	207	IPR003441	NAC domain
Pfam	PF02365	6.1E-26	56	181	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MNRIDPVPAD GYLRGFMCMD AYASHGRQSE QYLTRRDRTK ELPSMEREPI SSFQLPPGFR 60 FHPSDEELIN CYLQNKVNSR SLPASIIGEI ELYNYNPWEL PRKALFGEDE WYFFTPRDRK 120 YPNGERPNRT AASGYWKATG TDKPILTSGF VKIGVKKALV FYTGRLPKGG KTDWTMNEYR 180 LPATSQPSKL KGSMRLDDWV LCRVRQKGNM SKNTWEVRDS PCKNTIGYFP KMEELPSTQA 240 YPNTNTMTDF GYEGSQILAS LLAGQLIPPI YNISSEIFQD KGSSLYDDVS DKLNSPQADS 300 FFDIIFNASK GKSNDGTRYD NLFPSTQKVS NNKENDDLPQ GNKPNTDNKN FYIQGQPERD 360 IFNPIPSHAM VSLQGLNESS LTGRCPQ*

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MNRIDPVPAD GYLRGFMCMD AYASHGRQSE QYLTRRDRTK ELPSMEREPI SSFQLPPGFR  60
FHPSDEELIN CYLQNKVNSR SLPASIIGEI ELYNYNPWEL PRKALFGEDE WYFFTPRDRK  120
YPNGERPNRT AASGYWKATG TDKPILTSGF VKIGVKKALV FYTGRLPKGG KTDWTMNEYR  180
LPATSQPSKL KGSMRLDDWV LCRVRQKGNM SKNTWEVRDS PCKNTIGYFP KMEELPSTQA  240
YPNTNTMTDF GYEGSQILAS LLAGQLIPPI YNISSEIFQD KGSSLYDDVS DKLNSPQADS  300
FFDIIFNASK GKSNDGTRYD NLFPSTQKVS NNKENDDLPQ GNKPNTDNKN FYIQGQPERD  360
IFNPIPSHAM VSLQGLNESS LTGRCPQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-66	46	207	8	165	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-66	46	207	8	165	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-66	46	207	8	165	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-66	46	207	8	165	NO APICAL MERISTEM PROTEIN
4dul_A	4e-66	46	207	8	165	NAC domain-containing protein 19
4dul_B	4e-66	46	207	8	165	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269\|PubMed:17124321}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028069678.1	1e-174	NAC domain-containing protein 10-like
Swissprot	A0SPJ9	6e-71	NAM2_HORVV; NAC transcription factor NAM-2
TrEMBL	A0A2R6PF37	0.0	A0A2R6PF37_ACTCH; NAC transcription factor
STRING	XP_002526377.1	1e-120	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13390	11	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	5e-72	NAC domain containing protein 25

Publications ? help Back to Top
Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat. Science, 2006. 314(5803): p. 1298-301 [PMID:17124321]