PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn107771
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family WOX
Protein Properties Length: 139aa    MW: 16222.4 Da    PI: 8.4311
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn107771genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox42.61e-132511457
                HHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox 14 eLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                +Lee++ +   r+p+a++++++++ l    +++ ++V++WFqN++a++++
  Achn107771  2 ILEEMYTRggIRTPNASQIQQITAYLslygKIEGKNVFYWFQNHKARDRQ 51
                89****97779************************************996 PP
2Wus_type_Homeobox87.61.3e-281521464
  Wus_type_Homeobox 14 kiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       +iLee+y+  G+rtPn+++iq+ita L+ yGkie+kNVfyWFQN+kaR+rqk
         Achn107771  1 MILEEMYTrGGIRTPNASQIQQITAYLSLYGKIEGKNVFYWFQNHKARDRQK 52
                       69*****9789****************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.442152IPR001356Homeobox domain
PfamPF000462.0E-11251IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.0E-4251IPR009057Homeodomain-like
SuperFamilySSF466891.53E-7252IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MILEEMYTRG GIRTPNASQI QQITAYLSLY GKIEGKNVFY WFQNHKARDR QKLRKLLNHH  60
HHLLSYPDSR PPPVLPQVSH YSSVGFLPQD GVLEDASTQT MSYTWTVDHH LTERTKELYD  120
NFSDHCPPVL KLFIYQYS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB9382135e-40AB938213.1 Sarracenia purpurea PRS mRNA for pressed flower, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028077295.19e-39WUSCHEL-related homeobox 3
TrEMBLA0A2R6PF427e-78A0A2R6PF42_ACTCH; WUSCHEL-related homeobox like
STRINGEOY342241e-35(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29591951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.13e-29WOX family protein