PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn107881
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 159aa    MW: 17287.7 Da    PI: 7.4745
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn107881genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.00114062123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C+ C++ F++   L  H  +H
  Achn107881 40 FTCKTCNREFPSFQALGGHRASH 62
                89**********99999998887 PP
2zf-C2H214.50.000184106123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++Cp+Cg  Fs    L  H+r+H
  Achn107881  84 HECPICGLEFSVGQALGGHMRRH 106
                 79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.06E-838106No hitNo description
PfamPF139122.0E-123964IPR007087Zinc finger, C2H2
SMARTSM003550.164062IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.1774067IPR007087Zinc finger, C2H2
PROSITE patternPS0002804262IPR007087Zinc finger, C2H2
PfamPF139123.4E-1083108IPR007087Zinc finger, C2H2
SMARTSM003550.06884106IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.99584106IPR007087Zinc finger, C2H2
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MTVLKRSREE GEVEALATAN CLMLLSRVGE PAESDGHRVF TCKTCNREFP SFQALGGHRA  60
SHKKPRPVAG GEFLHCSPAK QKTHECPICG LEFSVGQALG GHMRRHRSCA TTSESAEGEV  120
EVVEEQNGRR GVLGLDLNLT PYENDVKFGK LMAPWLIA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028094278.12e-63zinc finger protein ZAT12-like
TrEMBLA0A2R6PFT91e-113A0A2R6PFT9_ACTCH; Zinc finger protein
STRINGXP_010043587.14e-54(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.14e-34C2H2 family protein