PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn108751
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 489aa    MW: 53603.5 Da    PI: 8.9152
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn108751genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.0001481101323
                 ETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                 C++C+k F r  nL+ H r H
  Achn108751  81 CEICNKGFQRDQNLQLHRRGH 101
                 *******************88 PP
2zf-C2H2120.00065155177123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 +kC++C+k +  +s+ k H + +
  Achn108751 155 WKCEKCSKKYAVQSDWKAHSKIC 177
                 58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.2E-578101IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.68E-778101No hitNo description
SMARTSM003550.1179101IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.82479101IPR007087Zinc finger, C2H2
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
SMARTSM00355100120150IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.6E-4143176IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.68E-7150175No hitNo description
SMARTSM00355140155175IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MMSDDGFSPI PPSIRGFAQE PNPNPNPNPN SNPAKRKRNL PGTPGKIIFL NVFCFMGEVD  60
PDAEVIALSP KSLMATNRFL CEICNKGFQR DQNLQLHRRG HNLPWKLKQR TSKEIKKKVY  120
ICPEKTCVHH DPSRALGDLT GIKKHFSRKH GEKKWKCEKC SKKYAVQSDW KAHSKICGTR  180
EYKCDCGTIF SRAFCDALAE ESARFTSVPT PNLNFRNELV NGSISNLQAA GNPQFPVAFR  240
PDLVGLEGGQ LSMDGLKPRV PMWLDQGNNN SHLNPIGNMA NSLPENIFGL STQENVFGNF  300
SSSPALPRVL KEEEENKGNL SETMSSFYFN NPNNPQEQEA LPHMSATALL QKAAQMGSTR  360
TSALFNNSFG LMSSSTPSSS LSMIPNFNSF NQGRNEVHHK LNDVMINNVS DLAPSSTSNG  420
GGLLWGGDMK SSRNLDRPIC GDQSMTRDFL GVGGGDHGGR PLSQQELAKF ASLGSAMGLS  480
HQYSGSHS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-28151212372Zinc finger protein JACKDAW
5b3h_F2e-28151212372Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that, together with JKD, regulates tissue boundaries and asymmetric cell division in roots by a rapid up-regulation of 'SCARECROW' (SCR), thus controlling the nuclear localization of 'SHORT-ROOT' (SHR) and restricting its action (PubMed:25829440). Confines CYCD6 expression to the cortex-endodermis initial/daughter (CEI/CEID) tissues (PubMed:25829440). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028077620.10.0zinc finger protein BALDIBIS-like
SwissprotQ944L31e-102IDD9_ARATH; Zinc finger protein BALDIBIS
TrEMBLA0A2R6PFA00.0A0A2R6PFA0_ACTCH; Protein indeterminate-domain like
STRINGVIT_06s0004g03070.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.16e-92C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]