PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn109071
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family WRKY
Protein Properties Length: 452aa    MW: 50307.4 Da    PI: 9.4998
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn109071genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.26.9e-33184240360
                 -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
        WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                 DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers  d+++ ei+Y+geHnh+k
  Achn109071 184 DGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSL-DGQIAEIVYNGEHNHSK 240
                 9***************************************.***************85 PP
2WRKY102.91.9e-32370427259
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  Dg++WrKYGqK+vkg+++prsYYrCt  +C+v+k+ver+ ++p+++++tYeg+Hnh+
  Achn109071 370 GDGFRWRKYGQKVVKGNPYPRSYYRCTNLNCSVRKQVERALDNPTAFITTYEGKHNHD 427
                 6********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-29175241IPR003657WRKY domain
SuperFamilySSF1182909.55E-26181241IPR003657WRKY domain
SMARTSM007747.8E-37182240IPR003657WRKY domain
PROSITE profilePS5081123.663184241IPR003657WRKY domain
PfamPF031061.6E-25184238IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.3E-33355429IPR003657WRKY domain
SuperFamilySSF1182909.55E-29363429IPR003657WRKY domain
PROSITE profilePS5081133.407364429IPR003657WRKY domain
SMARTSM007744.2E-38369428IPR003657WRKY domain
PfamPF031062.9E-26371427IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MMEVARADLV DGREKRQLVA RTINLAIRHD SKPTNHIIFD KIHKPKIIKK VKRKLHISTL  60
RSFSELLASA INSSPPNNEC SETAFTAIRP KTLRLKPTAN LAPVGVVSQR NSNSSVLAPV  120
EARILPPNQF KYHLRPNLSS NLHQNVSAQT EREKTNEPSK MVENIEDDKK TMPLTSNGDR  180
PSYDGYNWRK YGQKQVKGSE YPRSYYKCTH PNCPVKKKVE RSLDGQIAEI VYNGEHNHSK  240
PHPHPPKRNM PVGQGQGFVS GGTGQETNNL SGSTQMNDRN EGLEGRVENQ NEVGGLDRST  300
YLGKAPLSYD PIAAENSCAL SGECEEGSKG LEVEDDEPKS KRRKNETEPG ISGQEPPVVV  360
QNSTDSEIMG DGFRWRKYGQ KVVKGNPYPR SYYRCTNLNC SVRKQVERAL DNPTAFITTY  420
EGKHNHDVPT KSTNPAACEP DLQAATSKDK P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-30184429877Probable WRKY transcription factor 4
2lex_A8e-30184429877Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028072625.10.0WRKY transcription factor 44-like
RefseqXP_028072626.10.0WRKY transcription factor 44-like
RefseqXP_028072627.10.0WRKY transcription factor 44-like
TrEMBLA0A2R6QKH80.0A0A2R6QKH8_ACTCH; WRKY transcription factor
STRINGVIT_08s0040g03070.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA99512227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.17e-77WRKY family protein