PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn109311
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB
Protein Properties Length: 429aa    MW: 47895.9 Da    PI: 7.3042
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn109311genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.96.2e-15242748
                     HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +Ed++++ ++ ++G+  W+ I+r+++ gRt+kqc++rw+++l
       Achn109311  2 QEDDKIIALISKYGPSKWSQISRCLP-GRTGKQCRERWYNHL 42
                     6*************************.*************97 PP
2Myb_DNA-binding54.33.2e-174891146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     +++WT eE++ + da++ +G++ W+ Ia+ ++ gRt++ +k++w++
       Achn109311 48 KDAWTMEEELAIMDAHHIHGNR-WAEIAKILP-GRTDNAIKNHWHS 91
                     679*******************.*********.***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.977142IPR017930Myb domain
CDDcd001671.66E-13242No hitNo description
SMARTSM007172.0E-10244IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.9E-24249IPR009057Homeodomain-like
PfamPF139213.2E-16256No hitNo description
SuperFamilySSF466899.36E-292298IPR009057Homeodomain-like
PROSITE profilePS5129427.1994397IPR017930Myb domain
SMARTSM007179.3E-154795IPR001005SANT/Myb domain
CDDcd001674.35E-115093No hitNo description
Gene3DG3DSA:1.10.10.603.9E-235097IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MQEDDKIIAL ISKYGPSKWS QISRCLPGRT GKQCRERWYN HLNPDIKKDA WTMEEELAIM  60
DAHHIHGNRW AEIAKILPGR TDNAIKNHWH SSLKKKLDLY LATGNIHPVS KHGIQNGVED  120
ANRTSSSEEL IERSNKGLES TTESSSGTTD SKELESSTPS RDIDASSSVP ANGPVEAEVV  180
KCVPSHRLLY HDQPQLGSCI PLDPTLQNSD SPCVKGYGNL KHCPESVLKN AAKSFTNAPS  240
ILRKRKTEVS ILLSNKVWKT YGKAFEDRFN TSYDQEQTPN NSGLQDGSLC GTACLSSAND  300
GDKCPEPMYK RHGRDGEAFE DRFSTSDQQE ETRNNSGLHK GSLCRTASPS SGNDADKCQQ  360
PLKVYDWRER DEKAFEDTSN ASDELEQTTN NYGFQDGSLR GTTRLRVVSD RDKCRQSRNV  420
YKRRGRDA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-4029813109B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by ethylene and salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028077818.11e-107transcription factor MYB3R-5 isoform X1
SwissprotQ6R0322e-63MB3R5_ARATH; Transcription factor MYB3R-5
TrEMBLA0A2R6QKE10.0A0A2R6QKE1_ACTCH; Myb-related protein like
STRINGVIT_08s0007g00360.t011e-95(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09370.11e-61myb domain protein 3r-3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  3. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]