PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn110521
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 518aa    MW: 56728.8 Da    PI: 9.3659
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn110521genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.6e-055274123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                + C+ C+k F r  nL+ H r H
  Achn110521 52 FICEVCNKGFQREQNLQLHRRGH 74
                89*******************88 PP
2zf-C2H214.10.00014128150123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ykC++C+k +  +s+ k H +t+
  Achn110521 128 YKCEKCSKKYAVQSDWKAHSKTC 150
                 9******************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF121711.9E-55174IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.00525274IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.995274IPR007087Zinc finger, C2H2
SuperFamilySSF576674.94E-85274No hitNo description
Gene3DG3DSA:3.30.160.601.3E-55274IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002805474IPR007087Zinc finger, C2H2
SMARTSM0035513093123IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.1E-5116149IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.94E-8123148No hitNo description
SMARTSM0035575128148IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MAASSSSAAF FGLEREEDQS QMKQQQHSSA PTSSSAPPQK KRRNQPGTPS KFICEVCNKG  60
FQREQNLQLH RRGHNLPWKL KQKTTKEVKR KVYLCPEPTC VHHDPSRALG DLTGIKKHYS  120
RKHGEKKYKC EKCSKKYAVQ SDWKAHSKTC GTREYRCDCG TLFSRRDSFI THRAFCDALA  180
QESARHPSTL STIGSHLYGA SNNTMNLGLS SLGHQIPSIQ DQHQPSSDIL RLGGTRTGQF  240
DNLISPPIGA SFRPSQPMPS SAFFMNEQNH DFHEENQSQH GLLPNKPFHG LMQLNPDHLQ  300
NNSGLFNLSS SNFLVPNQFN NGNNIMGNNQ ITSGVPYIYR ASSTVQNSNV MAPHMSATAL  360
LQKAAQMGST TSNTSASLLR GFGSSSLSGN KADRPQISAN FGGVFGDNNE NNLQDLMNSL  420
AGGGSSNIFG SFNEQDNTYG GFNASRPNLE QTQTQHNLHH NIGGADHNNH SMTRDFLGVG  480
EIVRSMSGGG GIDHMSSLDS ERKTAPKSQA FGDGNFQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-34124188367Zinc finger protein JACKDAW
5b3h_F6e-34124188367Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00255DAPTransfer from AT2G02070Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028094501.10.0LOW QUALITY PROTEIN: protein indeterminate-domain 5, chloroplastic-like
SwissprotQ9ZUL31e-124IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBLA0A2R6RE720.0A0A2R6RE72_ACTCH; Protein indeterminate-domain 4 like
STRINGXP_010270754.10.0(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.11e-94indeterminate(ID)-domain 4
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]