PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn111051
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NAC
Protein Properties Length: 323aa    MW: 36466.4 Da    PI: 9.3563
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn111051genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.82.1e-53121391128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 
                 lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+++d+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++l++ +++
  Achn111051  12 LPPGFRFHPTDEELVVHYLKKKAASVPLPV-TIIADIDLYKFDPWELPSKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILTSnERQ 109
                 79****************************.89***************8888999*************************************9986778 PP

         NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                 +vg+kk Lvfy g+ pkg kt+W+mheyrl
  Achn111051 110 KVGVKKALVFYGGKPPKGIKTNWIMHEYRL 139
                 8***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-644174IPR003441NAC domain
PROSITE profilePS5100561.74512173IPR003441NAC domain
PfamPF023655.2E-2813139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MDSSEGLPHP NLPPGFRFHP TDEELVVHYL KKKAASVPLP VTIIADIDLY KFDPWELPSK  60
ATFGEQEWYF FSPRDRKYPN GARPNRAATS GYWKATGTDK PILTSNERQK VGVKKALVFY  120
GGKPPKGIKT NWIMHEYRLV DSNSRTKHPP IDPGNKKGSL RLDDWVLCRI YKKNNSNRPI  180
EREKEDFMDD HHQMLLSTTI IDGNSNQRLA ASKACTFGAL LEHEENFFEG MLQNSSISNL  240
APPSKKTDLP MVSLLSHDPV MKRNFPIQYW NELGSIGSKG FQGDQTVGNG STLVSLLNQV  300
PPQMSSFHPT TPYQLPNMNW NL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-7711766168NO APICAL MERISTEM PROTEIN
1ut4_B1e-7711766168NO APICAL MERISTEM PROTEIN
1ut7_A1e-7711766168NO APICAL MERISTEM PROTEIN
1ut7_B1e-7711766168NO APICAL MERISTEM PROTEIN
4dul_A1e-7711766168NAC domain-containing protein 19
4dul_B1e-7711766168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00058PBMTransfer from AT1G61110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028120869.11e-149NAC transcription factor 25-like
SwissprotQ8GY421e-104NAC25_ARATH; NAC transcription factor 25
TrEMBLA0A2R6QLH80.0A0A2R6QLH8_ACTCH; NAC transcription factor
STRINGEOY283341e-139(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18142466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.11e-107NAC domain containing protein 25