PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn111841
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GeBP
Protein Properties Length: 385aa    MW: 42261.4 Da    PI: 9.5884
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn111841genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573129.31.6e-40162257297
      DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                 lfqrlwse+Deiv+L G+ +++a++g++p++d+++ ++f+kks++++vsk+ql++K+rrL+kK+++k  k k+g++psfsk+h+qk++elskkiWg
  Achn111841 162 LFQRLWSEDDEIVILNGMAKYAAEKGADPVADMNGYHDFIKKSLHVDVSKTQLSDKVRRLRKKYENKTGKGKNGEDPSFSKPHEQKAYELSKKIWG 257
                 79*********************************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045049.6E-37163257IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MASSRRPETE AQSGSSSEEE GSSEENEDQE VSESEEDKAP TPTRQKRPAP KKLATSTKPL  60
TSSSDNSGSD SDLDPTPNDT RRPDPTIKPI ASKTMEEPPK ATKKPRSKPG SVTPATAKPG  120
AAARRAAESG SKMNRESKRA KKEAEEADNM AKKTGDNAKK QLFQRLWSED DEIVILNGMA  180
KYAAEKGADP VADMNGYHDF IKKSLHVDVS KTQLSDKVRR LRKKYENKTG KGKNGEDPSF  240
SKPHEQKAYE LSKKIWGNEA NGVGVDSPNS KVNGKSRKNQ SQKTTMASPK VDGLEVLDKA  300
KEGEKMDVES NLGSVGFNRS IVGLGLEEEI IKDGLEMIRG AKKLELKVKW EQLRVEEVEL  360
YLKRLDLIRE QAMLVLEALK SSGH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028098167.11e-115GLABROUS1 enhancer-binding protein-like
TrEMBLA0A2R6QLQ60.0A0A2R6QLQ6_ACTCH; Transcription factor
STRINGXP_006467953.17e-91(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30421947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.15e-37DNA-binding storekeeper protein-related transcriptional regulator