PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn111951
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB
Protein Properties Length: 250aa    MW: 28656.7 Da    PI: 6.397
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn111951genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.71.1e-121562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+ ++k++   +W   ++  g+ R++k+c++rw +yl
       Achn111951 15 KGAWSPEEDRKLITYIKRYRIWNWGEMPKAAGLLRSGKSCRLRWMNYL 62
                     79*****************999**********99************97 PP
2Myb_DNA-binding53.65e-1769113248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      g++T eEde +++ ++++G++ W++Ia+ ++ gRt++++k++w+++l
       Achn111951  69 GNFTREEDETIIKIHEMMGNK-WAAIAAALP-GRTDNEIKNHWHTHL 113
                      89*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.4491062IPR017930Myb domain
SuperFamilySSF466891.69E-2813109IPR009057Homeodomain-like
SMARTSM007173.5E-101464IPR001005SANT/Myb domain
PfamPF002492.1E-111562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-211669IPR009057Homeodomain-like
CDDcd001674.83E-81762No hitNo description
PROSITE profilePS5129426.77263117IPR017930Myb domain
SMARTSM007172.8E-1667115IPR001005SANT/Myb domain
PfamPF002491.1E-1569113IPR001005SANT/Myb domain
CDDcd001673.99E-1170113No hitNo description
Gene3DG3DSA:1.10.10.608.2E-2770116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MARAHCCKKL MALKKGAWSP EEDRKLITYI KRYRIWNWGE MPKAAGLLRS GKSCRLRWMN  60
YLRPNIKHGN FTREEDETII KIHEMMGNKW AAIAAALPGR TDNEIKNHWH THLKKRSRKP  120
VTRSEASTCE ANQKDLVPEL NILVPNDDPE ANASPCFGLS KNQNIEAHLG SESENFGDPI  180
GFWEEPLTVE NLYLESLQEM IVDPGFVIPY CDLWCPEPMS QYGVYNDLWF NLSVPTDMDS  240
GVIEPSFQF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-26131165107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028120269.11e-89transcription factor MYB4-like
TrEMBLA0A2R6QLM80.0A0A2R6QLM8_ACTCH; Myb-related protein like
STRINGEOY284754e-64(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.11e-53myb domain protein 15