PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn112481

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

C3H

Protein Properties

Length: 570aa MW: 62178.8 Da PI: 6.3766

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn112481	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.4	1e-07	202	222	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C +far G+Ck G++C+F Hg Achn112481 202 PCLYFAR-GYCKNGNSCRFLHG 222 8****.***********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	13.911	197	224	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	9.6E-4	199	223	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.1E-5	201	222	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.4E-5	202	222	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 570 aa Download sequence Send to blast
MDAYEATRIV LSRIQNLDPE NASKIMGLLL IQDHGEKEMI SLAFGPESLV HSVVLKARKD 60 LGLASSSPNT PLSPLSHFLP NSLSWQNSSS SRLLPSPLSI PNHSWDASNC FSEFSTESII 120 SPNSSLSSFP PLSSNSLNTS CALPFYGNGN GNTDLIDEFQ LQDQLSFLND GSPTLGPKSP 180 DFFYPHHDLA SDDSACGFGW KPCLYFARGY CKNGNSCRFL HGGAAADVGS DGGSMVGSPE 240 QCHELLRSKS AHQQRLTFPY SALAANKCMN LLLQQQQSDS PRALLMGEDM HKFGRSRLDR 300 NEFSMNPGGR MLCDAQDVLW RRKLEEQADL QQAIELQGRR LMGLQLLDVK RPNHHRALSS 360 GATFPSPINS PSFFNHTLIP PLDRSSSEVI KENGSNPAMV APVTVAADQQ SQFAANVDEK 420 EKETSIVANG TDEKNIGNDK ESNHKHEESD YLLESLEHNL PDSPFASPKA CGDYLTAFSN 480 TVIEAEKNVV VPGAASANNN LITSSLLPAP STLDMASFKS CYFHVPRKIH RIAKRPKICR 540 ETTTTTTGTT TTTIINTTIL LTKIPMHTT*

Sequence ? help Back to Top

Protein Sequence Length: 570 aa Download sequence Send to blast

MDAYEATRIV LSRIQNLDPE NASKIMGLLL IQDHGEKEMI SLAFGPESLV HSVVLKARKD  60
LGLASSSPNT PLSPLSHFLP NSLSWQNSSS SRLLPSPLSI PNHSWDASNC FSEFSTESII  120
SPNSSLSSFP PLSSNSLNTS CALPFYGNGN GNTDLIDEFQ LQDQLSFLND GSPTLGPKSP  180
DFFYPHHDLA SDDSACGFGW KPCLYFARGY CKNGNSCRFL HGGAAADVGS DGGSMVGSPE  240
QCHELLRSKS AHQQRLTFPY SALAANKCMN LLLQQQQSDS PRALLMGEDM HKFGRSRLDR  300
NEFSMNPGGR MLCDAQDVLW RRKLEEQADL QQAIELQGRR LMGLQLLDVK RPNHHRALSS  360
GATFPSPINS PSFFNHTLIP PLDRSSSEVI KENGSNPAMV APVTVAADQQ SQFAANVDEK  420
EKETSIVANG TDEKNIGNDK ESNHKHEESD YLLESLEHNL PDSPFASPKA CGDYLTAFSN  480
TVIEAEKNVV VPGAASANNN LITSSLLPAP STLDMASFKS CYFHVPRKIH RIAKRPKICR  540
ETTTTTTGTT TTTIINTTIL LTKIPMHTT*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028058072.1	1e-122	zinc finger CCCH domain-containing protein 22-like
Swissprot	Q10M00	6e-62	C3H22_ORYSJ; Zinc finger CCCH domain-containing protein 22
TrEMBL	A0A2R6RA46	0.0	A0A2R6RA46_ACTCH; Zinc finger CCCH domain-containing protein
STRING	Migut.N01811.1.p	1e-117	(Erythranthe guttata)

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]