PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn112891
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB_related
Protein Properties Length: 642aa    MW: 70900.5 Da    PI: 9.8872
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn112891genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.85.1e-08542591147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
       Achn112891 542 RRPFSVSEVEALVQAVEKLGTGRWRDVKMRAFdnaKHRTYVDLKDKWKTL 591
                      678999********************9776668**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542361.09E-8343433IPR029071Ubiquitin-related domain
PROSITE profilePS500539.395348418IPR000626Ubiquitin domain
CDDcd001960.00451351418No hitNo description
PROSITE profilePS5129414.551537596IPR017930Myb domain
SMARTSM007175.3E-8541594IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-10542592IPR009057Homeodomain-like
SuperFamilySSF466897.5E-16543624IPR009057Homeodomain-like
CDDcd116605.28E-17543593No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 642 aa     Download sequence    Send to blast
MNRKEDGDLQ LFICLGGASK TIENGRIWHL LSFWYDLYDM VLQNRLGYGF NGYQVPPAPR  60
AARSARRRGS IRKRVDDNQM CAFDLLATVA GKLLLEGQSS ASASNTQNGK EICTIVEDSI  120
KKEQQGAYKT SKVEVCDQGS CGRSFFVSEL VSQDPGLHNI SKEFSHAHID ECSGLASVIT  180
SSEGSDKVDS SDKLISGKSK NQTGNLASKV EVASSGTMKK TLRPSPRIGD RRIRKLLASK  240
YWKVTPKLKD GEHFNADSEI KPVYHNKKTS YKRQRSQRDY PIKKRILYDR CSVSNFDGGV  300
SREGISSSPR KGFSFGASCS AATVHGAFGK SAGVASRHTP SQSQDSHVKL HIKSFKVPEL  360
FIEIPETATV GSLKRTVMEA VMAILGDGLR VGVLLQGKKI RDDNKTLLQT GISHDNKLDA  420
LGFSLEPSHS QAPPPLCHED HLLPLTCDAP QPLTRYPPAP SGVHTAVQHS TADALSDTPF  480
TNLGNCIESD HDSAPSPPEM SIDKRPVDSR ALVSMPETNV EALAIVPMKK SKRSEAVQRR  540
IRRPFSVSEV EALVQAVEKL GTGRWRDVKM RAFDNAKHRT YVDLKDKWKT LVHTARISPQ  600
QRRGEPVPQE LLDRVLAAHA YWSQQQAKQQ LKHQSETFLL L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A1e-565296324107Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1229235DRRIRKL
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755186e-40HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015874015.10.0telomere repeat-binding protein 5 isoform X3
SwissprotQ6R0E31e-144TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLA0A2R6P7X00.0A0A2R6P7X0_ACTCH; Telomere repeat-binding protein
STRINGVIT_06s0004g04940.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30762348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-142TRF-like 2