PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn112951
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family M-type_MADS
Protein Properties Length: 1104aa    MW: 122981 Da    PI: 6.7367
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn112951genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.28.9e-18769817250
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 
                   enk+ r vt++kR+  i KK  ELS+LC+++++ + f+++g + +++
  Achn112951 769 MMENKRARMVTYTKRKDCIKKKTMELSTLCGIQACTVCFGPDGAVETWP 817
                 679*********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS513759.13195129IPR002885Pentatricopeptide repeat
PfamPF015350.1598124IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.106.8E-10130197IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513757.322130165IPR002885Pentatricopeptide repeat
PfamPF015350.29136155IPR002885Pentatricopeptide repeat
PfamPF130411.3E-9165219IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.734166200IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.0E-5169197IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.778206240IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.1E-4211241IPR002885Pentatricopeptide repeat
PfamPF130414.9E-14240289IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.772241275IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007565.7E-7244275IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.896276310IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007566.3E-7279312IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.986311345IPR002885Pentatricopeptide repeat
SuperFamilySSF819012.49E-7313522No hitNo description
PfamPF015350.13314343IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.3E-4314347IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.106.8E-10344585IPR011990Tetratricopeptide-like helical domain
PfamPF130417.3E-12345394IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.992346380IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.6E-5348381IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.106381415IPR002885Pentatricopeptide repeat
PfamPF130413.2E-10415464IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.257416450IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007569.2E-6418452IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.093451485IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007567.3E-6454487IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.192486520IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007566.4E-4489520IPR002885Pentatricopeptide repeat
PfamPF128545.7E-7516548IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.378521555IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.6E-8525557IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.693556590IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.4E-10558592IPR002885Pentatricopeptide repeat
PfamPF130411.8E-16559604IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.981591625IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.1E-7593626IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.294626662IPR002885Pentatricopeptide repeat
PROSITE profilePS5006615.18760820IPR002100Transcription factor, MADS-box
SMARTSM004324.1E-13760818IPR002100Transcription factor, MADS-box
CDDcd002663.07E-18761828No hitNo description
SuperFamilySSF554552.09E-18761833IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-5762782IPR002100Transcription factor, MADS-box
PfamPF003193.0E-16770816IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-5782797IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-5797818IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1104 aa     Download sequence    Send to blast
MSRNLLSRIR PHHNPKPNSS SYFPFKPHIK RLVDEVCEIL RTHHQWEETV ETRLSEEEII  60
PSDIAHLVFA SIRDAEFGLK FFDWVTHRPY GCSLDGYAYS SLLKLLAKSG VFSEVETVLE  120
SMKVEDKLPT CDALDAVIRA YSDSGLVDKA LEIYRNVLSL YNLVPSIFAC NSLLNVLVNQ  180
GRIDIAHKVY DEMVKRGDGS ENVSVDNYST CIMVRGLCKE GKVEEGRRLI EDRWGKGCIP  240
NIVFYNTLID GYCQKCDIEG AYGLFKELKL KGFLPAVETY GALINGYCKG GNFEAIDRLL  300
AEMNARGLKV NVQVYNNVID ARYRHGCVVM ATKFLRRMID SGCEPDIVTY NTVIYHSCRD  360
GKVQEAEQLL EQATRKGLIP NKLSYSPLLQ VYCRQGEFVR ASELIIKMTE RGDNPDVISY  420
GALVHGLVAS GEVDVALAIR DKMVERGVLP DAGIYNVLIN GLCKTDRLPK AKLLLAEMLD  480
QNVMPDAFVY VTLVDGFIRN GDLYEARKLF ELITEMGMDP GVVGYNTVIN GYCKFGMMMD  540
AVSCMKTMMK RGIYPDEFTY STIIDGYVKQ HDLDGALRIF CQMLKRKCKP NVVTYTSLIN  600
GFCRKGDSHG AEKLSDKMVS KGCISDSVVF AALLHGVCLE GRSKEWCGVG GFTDFADLGR  660
RLQKDIHDHL LCSIKDIPES PHSIVLVSNL RLSNPGSARS CNKGKTSASD QYQESNGPAH  720
SKVRATTMAV SLERLKTLNP LLRDVLRPSS PVKWSGMAET GRRNRPMKMM ENKRARMVTY  780
TKRKDCIKKK TMELSTLCGI QACTVCFGPD GAVETWPENP NDVKAVIDLY RVCVKNGRGG  840
GGIGGNLGER VKKVEEESGG AKKDELKKGL LGWNDDWLSG LSAEQLMVFL GKLEVKIESV  900
MDKIGFLNMT DRAPNYGFEM MNSGIAKNNV ELASSIVCQN PLRISDYSHN SMISFEIPMN  960
LETPNYCFEM KNSEMASYRI PLPIGDYSNN SMVNLGFPMK STPPIWALDY YINPMVSFDD  1020
PVNSATPVWP VNCFGDPISN QKLEETMDST GSEVSYTRPS LLDEFLLASS SSTNSSGSEV  1080
SYTHPSPLDE FLLASSSLSS FMF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5i9h_A2e-96786526450pentatricopeptide repeat protein dPPR-U8G2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028078545.10.0pentatricopeptide repeat-containing protein At1g52620
RefseqXP_028078546.10.0pentatricopeptide repeat-containing protein At1g52620
SwissprotQ9SSR40.0PPR77_ARATH; Pentatricopeptide repeat-containing protein At1g52620
TrEMBLA0A2R6QFU90.0A0A2R6QFU9_ACTCH; Pentatricopeptide repeat-containing protein
STRINGVIT_09s0002g06530.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64100.21e-60pentatricopeptide (PPR) repeat-containing protein
Publications ? help Back to Top
  1. Lurin C, et al.
    Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis.
    Plant Cell, 2004. 16(8): p. 2089-103
    [PMID:15269332]
  2. Lee K, et al.
    The mitochondrial pentatricopeptide repeat protein PPR19 is involved in the stabilization of NADH dehydrogenase 1 transcripts and is crucial for mitochondrial function and Arabidopsis thaliana development.
    New Phytol., 2017. 215(1): p. 202-216
    [PMID:28332713]
  3. Wang C, et al.
    The pentatricopeptide repeat protein MTSF2 stabilizes a nad1 precursor transcript and defines the 3΄ end of its 5΄-half intron.
    Nucleic Acids Res., 2017. 45(10): p. 6119-6134
    [PMID:28334831]