PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn113991
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C3H
Protein Properties Length: 297aa    MW: 33279.2 Da    PI: 4.5648
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn113991genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH40.16e-13180204226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 ++++C+f++r+G CkyG++C+F+H+
  Achn113991 180 GEKECPFYMRNGSCKYGSNCRFNHP 204
                 5789********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.2E-6178205IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.07178206IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-10180204IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6181205IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-5184203IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MEGSEERRVP KPYTDEEKHI PQQHQQQLGL GLNSGFQPSP SLDADPNLDQ KVASEDVQTD  60
KIVIDRELES LESITQELEI LQLVMDAFSD NGIAAKEDVK EKEENLEIPG QTECKVIVII  120
VVFVIVFVVV VSIPRVHIYY HGIRRQYFKC QVDSGGGKQA TRELKAYSLE KCLWRPIGEG  180
EKECPFYMRN GSCKYGSNCR FNHPDPTAVG GGDAHSEYGN TGPLSLQEAS QSTVSPWSPP  240
RALNETSTYA PPVFSPTQGV PSSNPEWNGY QTLVSFEDVH FLMDFTDFTR FLYMEH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028116349.19e-44zinc finger CCCH domain-containing protein 67 isoform X1
TrEMBLA0A2R6PS985e-59A0A2R6PS98_ACTCH; Zinc finger CCCH domain-containing protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.13e-30C3H family protein