PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn114041
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GRAS
Protein Properties Length: 514aa    MW: 56909.4 Da    PI: 6.9718
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn114041genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS370.32.6e-1131445122374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                  +lL++cAeav+ +d++ a+ lL++l+  a   g+++qR+a++f+++La rl+  ++  +  + + +  ++  +e+  al+l +e++P ++f+h++aN 
  Achn114041 144 FQLLISCAEAVACRDKSYASVLLSELRASALVFGSSFQRVASCFVQGLADRLTLVQPLGAVGFIMPTVMNSALDEKEEALRLVYEICPHIQFGHFVANA 242
                 589**************************************************9444333333333333456999999********************* PP

        GRAS 101 aIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                 +Ilea+ege+ vH++D+++s    +G QW  L+q+La+R+++pp  lRiT vg       ++ + +g++L+ +A++lg++fef++ v+++le+l++e++
  Achn114041 243 TILEAFEGESFVHVVDLGMSlglpHGHQWQHLIQSLATRSGQPPlCLRITSVGL----FVKQFQIIGNKLKTYAQTLGLNFEFSI-VETNLENLKPEHI 336
                 ****************99874444678*************999989********....99************************9.799********** PP

        GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293
                 + +++E+l+Vn++lqlh +++es    +   +vL+++ +lsPk +v+veq+++hn++ Fl rf+eal+yysa+fdsl+a lp+ +  r+k+E++++++e
  Achn114041 337 KRHNNEVLVVNSILQLHCVVKESRGALN---SVLQVIHELSPKALVLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDTRRAKIEQFFFAEE 432
                 ********************88877777...8******************************************************************* PP

        GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 i+n+v+ceg +r+erhe++ +Wr+r+++aGF+p+p++  +++qak  l k+k +dg+++ ee+g+lvlgWk++p+v++S+W+
  Achn114041 433 IKNIVSCEGPARVERHEKVDQWRRRMSRAGFQPAPIK--MMAQAKQWLGKIKvGDGFTIVEEKGCLVLGWKSKPIVAASCWK 512
                 ***********************************96..789***************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.583117493IPR005202Transcription factor GRAS
PfamPF035149.1E-111144512IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MAQSPLSYDL CGVGIDDVSG LDLSLSAMAY YPSSYMPILE TTASTWFPIV SDENGSHKRL  60
KRTTSVPEVA LANVGFSHGQ GSISRNSSTN SLHTFPRLQF RNHILTYTQR YLAAEAVEEA  120
AAAIIGLENA KAEEDGSGDE MRLFQLLISC AEAVACRDKS YASVLLSELR ASALVFGSSF  180
QRVASCFVQG LADRLTLVQP LGAVGFIMPT VMNSALDEKE EALRLVYEIC PHIQFGHFVA  240
NATILEAFEG ESFVHVVDLG MSLGLPHGHQ WQHLIQSLAT RSGQPPLCLR ITSVGLFVKQ  300
FQIIGNKLKT YAQTLGLNFE FSIVETNLEN LKPEHIKRHN NEVLVVNSIL QLHCVVKESR  360
GALNSVLQVI HELSPKALVL VEQDSSHNGP FFLGRFMEAL HYYSAIFDSL DAMLPKYDTR  420
RAKIEQFFFA EEIKNIVSCE GPARVERHEK VDQWRRRMSR AGFQPAPIKM MAQAKQWLGK  480
IKVGDGFTIV EEKGCLVLGW KSKPIVAASC WKC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-601275117378Protein SCARECROW
5b3h_A4e-6015051125377Protein SCARECROW
5b3h_D4e-6015051125377Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028063309.10.0DELLA protein RGL1-like
TrEMBLA0A2R6PS620.0A0A2R6PS62_ACTCH; DELLA protein
STRINGXP_009359535.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA81672130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.16e-82RGA-like 1