PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn115241
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB_related
Protein Properties Length: 960aa    MW: 106277 Da    PI: 7.5286
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn115241genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.61.4e-08459507348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E  +lvd+v+++G g+W+ I r        Rt  ++k++w+++l
       Achn115241 459 PWTLSEVVKLVDGVARYGVGRWSEIKRLAFasySYRTSVDLKDKWRNLL 507
                      8****************************99**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.351452511IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-12454511IPR009057Homeodomain-like
SMARTSM007172.0E-9456509IPR001005SANT/Myb domain
SuperFamilySSF466891.36E-16458517IPR009057Homeodomain-like
CDDcd116604.39E-18458508No hitNo description
PfamPF002492.9E-6459507IPR001005SANT/Myb domain
PROSITE profilePS5171051.164623848IPR031167OBG-type guanine nucleotide-binding (G) domain
TIGRFAMsTIGR002311.8E-18624773IPR005225Small GTP-binding protein domain
Gene3DG3DSA:3.40.50.3001.3E-42624732IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF019264.8E-20624739IPR006073GTP binding domain
CDDcd018961.48E-140624855No hitNo description
SuperFamilySSF525401.62E-53624863IPR027417P-loop containing nucleoside triphosphate hydrolase
PRINTSPR003262.4E-28625645IPR006073GTP binding domain
PRINTSPR003262.4E-28646664IPR006073GTP binding domain
PRINTSPR003262.4E-28673688IPR006073GTP binding domain
PROSITE patternPS009050675688IPR006074GTP1/OBG, conserved site
PRINTSPR003262.4E-28690708IPR006073GTP binding domain
PfamPF168973.2E-43744849IPR031662GTP binding protein, second domain
Gene3DG3DSA:3.40.50.3001.3E-42799865IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF812712.32E-14844926IPR012676TGS-like
CDDcd016661.65E-40849926No hitNo description
PfamPF028248.8E-24850926IPR004095TGS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016023Cellular Componentcytoplasmic, membrane-bounded vesicle
GO:0003677Molecular FunctionDNA binding
GO:0003924Molecular FunctionGTPase activity
GO:0005525Molecular FunctionGTP binding
GO:0019003Molecular FunctionGDP binding
GO:0070300Molecular Functionphosphatidic acid binding
Sequence ? help Back to Top
Protein Sequence    Length: 960 aa     Download sequence    Send to blast
MVPATDDEVM EVEDLLEDDK SEIHSVADTG QNVGCASNDE FPSTKTQFDG SEGQCENPEV  60
DTEKSNTQLD TTVELEKLNA GTEETVPLFA TNSNDGHIDQ PGSGGECSNP LDGPIENESS  120
VSALCTNSKP DFSKLEGEIC LDNLSVRELH ETFKATFGRE TSVKDKQWLK RRIAMGLTNS  180
CDISTTTFVI KDNKVVKKGK EESVKNVEGE LAEVSVTGAV NENCEGSPRG CNNLMENPED  240
VSDDRLRNPG AEYDCSVGDL QTEQKAAKRV RKPTKRYIEE LSEVESREYS GKLVSSVKNS  300
GDGQSSPVSR VRPVRDTWLD GRPVVTRQDS LGGSGVQVPY VCRVRRSRPR ENFMALMELQ  360
PSSMGMATKL VKKALGVRGA RPDNKIGNKV FKARSASGWI QKPPVAEPEK DEHYQEIKAS  420
ELEKDADLKH LDSSGDYSDE YTGSVPAAKG GMRRKHHRPW TLSEVVKLVD GVARYGVGRW  480
SEIKRLAFAS YSYRTSVDLK DKWRNLLRAS FANSPAEKGM QSSRKHASVP IPAPILLRVR  540
ELAEIQAQVA PNLSSGKLAA CDGRNVHETR SDSSCLKVLI SPWSVIGWHK GWRRSDGRDW  600
LGRNWLGSSG AGEGFEVTKY GHGRVALIGF PSVGKSTLLT LLTGTHSEAA SYEFTTLTCI  660
PGIIHYNDTK IQLLDLPGII EGASEGKGRG RQVIAVSKSS DIVLMVLDAS KSEGHRQILT  720
KELEAVGLRL NKRPPQIYFK KKKTGGISFN STIPLTHVDE KLCYQILHEY KIHNAEVLFR  780
ENATVDDLID VIEGNRKYMK CIYVYNKIDV VGIDDVNKLS RQPNSVVISC NLKLNLDRIL  840
AKMWEEMGLV RVYTKPQGQQ PDFTDPVVLS TDRGGCSVED FCNHIHRTLV KDVKYVLVWG  900
ISARHYPQHC GLSHVLQDED VVQIVKKKER EDGGRGRFKS HSNAPARISD RQKKAPLKT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4a9a_A1e-12161492764376RIBOSOME-INTERACTING GTPASE 1
4a9a_B1e-12161492764376RIBOSOME-INTERACTING GTPASE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028073173.10.0uncharacterized protein LOC114275349
TrEMBLA0A2G2WPW50.0A0A2G2WPW5_CAPBA; Developmentally-regulated GTP-binding protein 2
STRINGVIT_09s0002g01480.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-107TRF-like 6