PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn115281
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB_related
Protein Properties Length: 303aa    MW: 33124.3 Da    PI: 10.0726
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn115281genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.29.3e-14555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT eE++ l  +v+++G+g Wk I r        k+R+  ++k++w++
       Achn115281  5 KQKWTSEEEDALRAGVAKHGTGKWKNILRDPEfapslKNRSNIDLKDKWRN 55
                     79************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.068161IPR017930Myb domain
SuperFamilySSF466892.66E-16259IPR009057Homeodomain-like
SMARTSM007175.9E-8459IPR001005SANT/Myb domain
PfamPF002493.4E-9555IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-14556IPR009057Homeodomain-like
CDDcd116601.07E-20656No hitNo description
SuperFamilySSF467857.07E-17109192IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.0E-16110187IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005263.3E-18110175IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150425.374112180IPR005818Linker histone H1/H5, domain H15
CDDcd000731.20E-10114192No hitNo description
PfamPF005381.1E-11114174IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MGNPKQKWTS EEEDALRAGV AKHGTGKWKN ILRDPEFAPS LKNRSNIDLK DKWRNMSVNI  60
ATQGSKEKSR VPKVKATTTG LLANGENSAS AASLADSEIT DDPSKSPQDG KTAPRYNAMI  120
IDALSSVKDS NGSDIGAIVK FIEQKHEVPQ NFRRLLSSKL RRLVLQGKLE KVQNSYRIKK  180
EAALGTKTPT PKQKEIRPRP PQNPGLVTSQ ETVEAAAKNA AYQIAEAENK SFVAAEAMKE  240
AERVARMAED SESLLQLVKE IYEQYSRHPI ITVNIANQTS SSSAANQART VDFPATGTDH  300
CN*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022891332.11e-123telomere repeat-binding factor 4-like
TrEMBLA0A2R6PV910.0A0A2R6PV91_ACTCH; Single myb histone like
STRINGXP_010242277.11e-121(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25042355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.17e-69MYB_related family protein