PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn116251
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 335aa    MW: 36997.8 Da    PI: 8.0173
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn116251genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.82.2e-09216263455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +h+ +Er RR++i +++  L+ l+P +    +k   Ka iL + ++Y++sLq
  Achn116251 216 SHSLAERVRREKISERMKMLQGLVPGC----DKVTGKALILDEIINYVQSLQ 263
                 8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.89E-10210267No hitNo description
PROSITE profilePS5088815.504212262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-17212271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-16212283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-6216263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-10218268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MLDESNEMEN GSVKCTIRDK VHSITGVIEL TFHGVLFSTQ KKANSEIDPM LDESNVMENG  60
SVKCTIRDKV HSITGVIELT FHGVLFSTQK KANSCCLENA PKAALSNNEP SLTCKHSSDS  120
SSVVDNPGIG DQFAHNLVSM TKKRTNSDDS STSSVQSMDA REVKQKKQKR RNGVIKDDKE  180
KKPKISKKDH LKKVGEDQVP TGYVLVRARR GQATDSHSLA ERVRREKISE RMKMLQGLVP  240
GCDKVTGKAL ILDEIINYVQ SLQNQVERLN SMESPLPNGS QCSPDQTNSL SHATTTFTDP  300
NSYSLLDNNI SYLLFDQQVQ IPNILPQVCS FINS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007209284.19e-69transcription factor bHLH137
TrEMBLA0A2R6PUL51e-144A0A2R6PUL5_ACTCH; Transcription factor bHLH137 like
STRINGEMJ104833e-68(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.24e-37bHLH family protein