PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn116691

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

LBD

Protein Properties

Length: 178aa MW: 19374.1 Da PI: 6.7465

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn116691	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	138.5	2.3e-43	10	108	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrrkC ++C++apyfp e+p+kf vhk+FGasnv+k+l++l +++re+a++sl+yeAear+rdPvyG+vg i+ lq+q+e+l+ el+ +++ Achn116691 10 PCAACKFLRRKCMPGCIFAPYFPPEEPQKFIHVHKIFGASNVSKILNELLPHQRENAVNSLAYEAEARIRDPVYGCVGAISLLQRQVERLQRELEIVNA 108 7*********************************************************************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.295	9	110	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-42	10	107	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MASTSIYNSP CAACKFLRRK CMPGCIFAPY FPPEEPQKFI HVHKIFGASN VSKILNELLP 60 HQRENAVNSL AYEAEARIRD PVYGCVGAIS LLQRQVERLQ RELEIVNADL IRYACGEIPT 120 ALPDPGGLQD GSSADSVVEF TRRIGNGGGG FYQTPSLPFP YPLPWNDSPS GGGEGKF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	8e-66	9	123	10	127	LOB family transfactor Ramosa2.1
5ly0_B	8e-66	9	123	10	127	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269\|PubMed:11934861}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002322187.2	1e-92	protein LATERAL ORGAN BOUNDARIES
Refseq	XP_011046208.1	1e-92	PREDICTED: protein LATERAL ORGAN BOUNDARIES
Refseq	XP_011046209.1	1e-92	PREDICTED: protein LATERAL ORGAN BOUNDARIES
Refseq	XP_024442234.1	1e-92	protein LATERAL ORGAN BOUNDARIES
Swissprot	Q9FML4	5e-66	LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBL	A0A2R6PUD6	1e-126	A0A2R6PUD6_ACTCH; Protein LATERAL ORGAN BOUNDARIES like
STRING	POPTR_0015s09370.1	4e-92	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.4	2e-68	LBD family protein

Publications ? help Back to Top
Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138]